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Report for CCDS13349.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13349.1 Public Homo sapiens 20 RBPJL 24 110 108 CCDS HistoryNCBI Gene:11317Re-query CCDS DB by CCDS ID:13349.1Re-query CCDS DB by GeneID:11317See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13349.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000343694.8 ENSP00000341243.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000343694.8Link to Ensembl Protein Viewer:ENSP00000341243.3Re-query CCDS DB by Nucleotide ID:ENST00000343694Re-query CCDS DB by Protein ID:ENSP00000341243
Original member Current member NCBI NM_014276.4 NP_055091.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014276.4Link to Protein Sequence:NP_055091.2Re-query CCDS DB by Nucleotide ID:NM_014276Re-query CCDS DB by Protein ID:NP_055091Link to BLAST:NP_055091.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055091.2 517 Q9UBG7-1 517 100% 0 0

Chromosomal Locations for CCDS 13349.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 45306923 45306944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 45308143 45308251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 45309567 45309692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 45311589 45311659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 45311839 45311954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 45312221 45312395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 45313468 45313605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 45314035 45314144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 45314413 45314565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 45316187 45316342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 45316477 45316580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 45316686 45316959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1554 nt):
ATGGACCCCGCAGGGGCAGCAGACCCCTCAGTGCCTCCCAATCCTTTGACTCACCTGAGCCTGCAGGACA
GATCAGAGATGCAGCTGCAGAGCGAAGCCGACAGGCGGAGCCTCCCGGGCACTTGGACCAGGTCATCCCC
AGAGCACACCACCATTCTGAGGGGAGGCGTGCGCAGGTGCCTGCAGCAACAGTGTGAACAGACTGTGCGG
ATCCTGCATGCCAAGGTGGCCCAGAAATCATACGGAAATGAGAAGCGGTTCTTCTGCCCCCCGCCCTGTG
TCTACCTCTCGGGGCCTGGCTGGAGGGTGAAGCCAGGGCAGGATCAAGCTCACCAGGCGGGGGAAACGGG
GCCCACGGTCTGCGGTTACATGGGACTGGACAGCGCGTCCGGCAGCGCCACTGAGACGCAGAAGCTGAAT
TTCGAGCAGCAGCCGGACTCCAGGGAATTCGGCTGCGCCAAGACCCTGTACATCTCAGATGCAGACAAGA
GGAAGCACTTTCGGCTGGTGCTGCGGCTGGTGCTGCGCGGGGGCCGGGAGCTGGGTACCTTCCACAGCCG
CCTTATCAAGGTCATCTCGAAGCCCTCGCAGAAGAAGCAGTCGCTGAAAAACACCGATCTGTGCATATCC
TCCGGCTCAAAGGTCTCCCTCTTCAACCGCCTGCGCTCTCAGACGGTCTCCACACGCTACCTCTCTGTGG
AGGATGGGGCCTTTGTGGCCAGTGCACGACAGTGGGCTGCCTTCACGCTCCACCTGGCTGATGGGCACTC
TGCCCAAGGAGACTTCCCACCGCGAGAGGGCTACGTTCGCTATGGCTCCCTGGTGCAGCTCGTCTGCACG
GTCACCGGCATCACACTACCTCCCATGATCATCCGTAAAGTAGCAAAACAGTGTGCGCTCCTTGATGTGG
ATGAGCCCATCTCCCAGCTGCACAAGTGTGCATTCCAGTTTCCAGGCAGTCCCCCAGGAGGGGGTGGCAC
CTACTTATGCCTTGCCACAGAGAAGGTGGTGCAATTTCAGGCCTCTCCCTGCCCCAAGGAGGCGAACAGG
GCTCTGCTTAACGACAGCTCTTGCTGGACCATCATCGGCACCGAGTCGGTGGAATTTTCCTTCAGCACCA
GCCTGGCGTGTACCCTGGAGCCGGTCACTCCGGTGCCTCTCATCAGCACCCTAGAGCTGAGCGGCGGGGG
CGACGTGGCCACGCTGGAGCTCCACGGAGAGAACTTCCACGCGGGGCTCAAGGTGTGGTTTGGGGACGTG
GAGGCAGAAACCATGTACAGGAGCCCGCGGTCCCTGGTGTGCGTGGTGCCGGACGTGGCGGCCTTCTGCA
GCGACTGGCGCTGGCTGCGCGCTCCCATCACAATCCCCATGAGCCTGGTGCGCGCCGACGGGCTCTTCTA
CCCTAGTGCCTTCTCCTTCACCTACACCCCGGAATACAGCGTGCGGCCGGGTCACCCCGGCGTCCCCGAG
CCCGCCACCGACGCCGACGCGCTCCTGGAGAGCATCCATCAGGAGTTCACGCGCACCAACTTCCACCTCT
TCATCCAGACTTAG

Translation (517 aa):
MDPAGAADPSVPPNPLTHLSLQDRSEMQLQSEADRRSLPGTWTRSSPEHTTILRGGVRRCLQQQCEQTVR
ILHAKVAQKSYGNEKRFFCPPPCVYLSGPGWRVKPGQDQAHQAGETGPTVCGYMGLDSASGSATETQKLN
FEQQPDSREFGCAKTLYISDADKRKHFRLVLRLVLRGGRELGTFHSRLIKVISKPSQKKQSLKNTDLCIS
SGSKVSLFNRLRSQTVSTRYLSVEDGAFVASARQWAAFTLHLADGHSAQGDFPPREGYVRYGSLVQLVCT
VTGITLPPMIIRKVAKQCALLDVDEPISQLHKCAFQFPGSPPGGGGTYLCLATEKVVQFQASPCPKEANR
ALLNDSSCWTIIGTESVEFSFSTSLACTLEPVTPVPLISTLELSGGGDVATLELHGENFHAGLKVWFGDV
EAETMYRSPRSLVCVVPDVAAFCSDWRWLRAPITIPMSLVRADGLFYPSAFSFTYTPEYSVRPGHPGVPE
PATDADALLESIHQEFTRTNFHLFIQT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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