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Report for CCDS2613.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2613.1 Public Homo sapiens 3 TMEM40 24 110 108 CCDS HistoryNCBI Gene:55287Re-query CCDS DB by CCDS ID:2613.1Re-query CCDS DB by GeneID:55287See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2613.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000264728.8 ENSP00000264728.8 Accepted alive Link to Ensembl Transcript Viewer:ENST00000264728.8Link to Ensembl Protein Viewer:ENSP00000264728.8Re-query CCDS DB by Nucleotide ID:ENST00000264728Re-query CCDS DB by Protein ID:ENSP00000264728
Original member Current member EBI ENST00000314124.12 ENSP00000322837.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000314124.12Link to Ensembl Protein Viewer:ENSP00000322837.7Re-query CCDS DB by Nucleotide ID:ENST00000314124Re-query CCDS DB by Protein ID:ENSP00000322837
Original member Current member NCBI NM_018306.4 NP_060776.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018306.4Link to Protein Sequence:NP_060776.2Re-query CCDS DB by Nucleotide ID:NM_018306Re-query CCDS DB by Protein ID:NP_060776Link to BLAST:NP_060776.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060776.2 233 Q8WWA1-1 233 100% 0 0

Chromosomal Locations for CCDS 2613.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 12734774 12734793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 12735555 12735617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 12736578 12736652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 12736764 12736835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 12737707 12737754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 12738136 12738168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 12738553 12738588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 12742454 12742507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 12743900 12743989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 12748655 12748792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 12749760 12749832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (702 nt):
ATGGAGACTTCAGCATCCTCCTCCCAGCCTCAGGACAACAGTCAAGTCCACAGAGAAACAGAAGATGTAG
ACTATGGAGAGACAGATTTCCACAAGCAAGATGGGAAGGCTGGACTCTTTTCCCAAGAACAATATGAGAG
AAACAAGTCTTCTTCCTCCTCCTCCTCTTCCTCCTCATCCTCCTCATCTTCTTCATCCTCCTCCTCCTCA
GAGAGCAATGATGAGGACCAGCAACCCAGAGCAACCGGAAAACATCGACGGAGCCTGGGGGCTGGATACC
CCCACGGGAACGGCTCACCCGGTCCTGGGCATGGGGAGCCTGACGTTTTGAAGGATGAGCTTCAACTCTA
TGGAGATGCTCCTGGAGAGGTGGTACCCTCTGGGGAATCAGGACTCCGAAGGAGAGGCTCTGACCCAGCA
AGTGGAGAAGTGGAGGCCTCTCAGTTAAGAAGACTGAATATAAAGAAAGATGATGAGTTTTTCCATTTCG
TCCTCCTGTGCTTTGCCATCGGGGCCTTGCTGGTGTGTTATCACTATTACGCAGACTGGTTCATGTCTCT
TGGGGTCGGCCTGCTCACCTTCGCCTCCCTGGAAACCGTTGGCATCTACTTCGGACTAGTGTACCGTATC
CACAGCGTCCTCCAAGGCTTCATCCCCCTCTTCCAGAAGTTTAGGCTGACAGGGTTCAGGAAGACTGACT
GA

Translation (233 aa):
METSASSSQPQDNSQVHRETEDVDYGETDFHKQDGKAGLFSQEQYERNKSSSSSSSSSSSSSSSSSSSSS
ESNDEDQQPRATGKHRRSLGAGYPHGNGSPGPGHGEPDVLKDELQLYGDAPGEVVPSGESGLRRRGSDPA
SGEVEASQLRRLNIKKDDEFFHFVLLCFAIGALLVCYHYYADWFMSLGVGLLTFASLETVGIYFGLVYRI
HSVLQGFIPLFQKFRLTGFRKTD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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