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Report for CCDS31448.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31448.1 Public Homo sapiens 11 CCDC34 24 110 108 CCDS HistoryNCBI Gene:91057Re-query CCDS DB by CCDS ID:31448.1Re-query CCDS DB by GeneID:91057See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31448.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000328697.11 ENSP00000330240.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000328697.11Link to Ensembl Protein Viewer:ENSP00000330240.5Re-query CCDS DB by Nucleotide ID:ENST00000328697Re-query CCDS DB by Protein ID:ENSP00000330240
Original member Current member NCBI NM_030771.2 NP_110398.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_030771.2Link to Protein Sequence:NP_110398.1Re-query CCDS DB by Nucleotide ID:NM_030771Re-query CCDS DB by Protein ID:NP_110398Link to BLAST:NP_110398.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_110398.1 373 Q96HJ3-1 373 100% 0 0

Chromosomal Locations for CCDS 31448.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 27338821 27339035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 27340696 27340837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 27341392 27341550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 27350332 27350439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 27357403 27357541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 27362836 27363194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1122 nt):
ATGTGGGCGGCGGGGCGCTGGGGGCCTACTTTTCCCTCTTCCTACGCCGGTTTCTCTGCTGACTGCAGAC
CCAGGTCTCGGCCCTCCTCGGACTCCTGCTCAGTCCCTATGACGGGCGCACGTGGGCAGGGGCTGGAGGT
GGTGCGCTCGCCGTCGCCGCCGCTGCCGCTGAGCTGCAGCAATTCCACCAGGTCGCTGTTGTCTCCCCTT
GGCCACCAGAGCTTCCAGTTTGACGAGGACGACGGTGACGGGGAGGATGAGGAAGACGTGGATGATGAGG
AAGACGTGGATGAAGATGCCCATGATTCAGAGGCCAAAGTGGCGAGCCTGAGAGGAATGGAGTTACAGGG
GTGCGCCAGCACTCAGGTTGAATCAGAAAATAACCAAGAAGAACAGAAACAGGTGCGCTTACCAGAAAGC
CGCCTGACACCATGGGAGGTGTGGTTTATTGGCAAAGAAAAAGAAGAACGTGACCGGCTGCAACTGAAAG
CTCTAGAGGAATTAAATCAACAACTAGAAAAAAGAAAAGAAATGGAAGAACGTGAAAAAAGAAAGATAAT
TGCTGAAGAAAAGCACAAGGAATGGGTTCAGAAAAAGAATGAGCAAAAAAGAAAAGAAAGAGAACAAAAA
ATTAATAAAGAAATGGAGGAAAAAGCAGCAAAGGAACTGGAGAAAGAATACTTGCAAGAAAAAGCAAAAG
AAAAATATCAAGAATGGTTAAAGAAAAAAAATGCTGAAGAATGTGAGAGGAAGAAGAAAGAAAAGGAAAA
AGAAAAACAACAGCAAGCTGAAATACAGGAGAAAAAGGAAATAGCAGAAAAAAAGTTTCAAGAATGGTTG
GAAAATGCGAAACATAAACCTCGTCCAGCTGCAAAGAGCTATGGTTATGCCAATGGAAAACTTACAGGTT
TTTACAGTGGAAATTCCTATCCAGAACCAGCCTTTTATAATCCAATTCCGTGGAAACCAATTCATATGCC
ACCTCCCAAAGAAGCTAAGGATCTATCAGGAAGGAAGAGTAAAAGACCTGTGATAAGTCAGCCACACAAG
TCATCATCTCTGGTAATTCATAAAGCCAGGAGCAATCTTTGCCTTGGAACTCTGTGCAGAATACAAAGAT
AG

Translation (373 aa):
MWAAGRWGPTFPSSYAGFSADCRPRSRPSSDSCSVPMTGARGQGLEVVRSPSPPLPLSCSNSTRSLLSPL
GHQSFQFDEDDGDGEDEEDVDDEEDVDEDAHDSEAKVASLRGMELQGCASTQVESENNQEEQKQVRLPES
RLTPWEVWFIGKEKEERDRLQLKALEELNQQLEKRKEMEEREKRKIIAEEKHKEWVQKKNEQKRKEREQK
INKEMEEKAAKELEKEYLQEKAKEKYQEWLKKKNAEECERKKKEKEKEKQQQAEIQEKKEIAEKKFQEWL
ENAKHKPRPAAKSYGYANGKLTGFYSGNSYPEPAFYNPIPWKPIHMPPPKEAKDLSGRKSKRPVISQPHK
SSSLVIHKARSNLCLGTLCRIQR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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