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Report for CCDS4677.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4677.1 Public Homo sapiens 6 TRIM15 24 110 108 CCDS HistoryNCBI Gene:89870Re-query CCDS DB by CCDS ID:4677.1Re-query CCDS DB by GeneID:89870See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4677.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000376694.9 ENSP00000365884.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000376694.9Link to Ensembl Protein Viewer:ENSP00000365884.4Re-query CCDS DB by Nucleotide ID:ENST00000376694Re-query CCDS DB by Protein ID:ENSP00000365884
Original member Current member NCBI NM_033229.3 NP_150232.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_033229.3Link to Protein Sequence:NP_150232.2Re-query CCDS DB by Nucleotide ID:NM_033229Re-query CCDS DB by Protein ID:NP_150232Link to BLAST:NP_150232.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_150232.2 465 Q9C019-1 465 100% 0 0

Chromosomal Locations for CCDS 4677.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 30163685 30164065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30167176 30167271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30168300 30168530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30169241 30169263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30170501 30170616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30170976 30171008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30171832 30172349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1398 nt):
ATGCCCGCAACCCCGTCCCTGAAGGTGGTCCATGAGCTGCCTGCCTGTACCCTCTGTGCGGGGCCGCTGG
AGGATGCGGTGACCATTCCCTGTGGACACACCTTCTGCCGGCTCTGCCTCCCCGCGCTCTCCCAGATGGG
GGCCCAATCCTCGGGCAAGATCCTGCTCTGCCCGCTCTGCCAAGAGGAGGAGCAGGCAGAGACTCCCATG
GCCCCTGTGCCCCTGGGCCCGCTGGGAGAAACTTACTGCGAGGAGCACGGCGAGAAGATCTACTTCTTCT
GCGAGAACGATGCCGAGTTCCTCTGTGTGTTCTGCAGGGAGGGTCCCACGCACCAGGCGCACACCGTGGG
GTTCCTGGACGAGGCCATTCAGCCCTACCGGGATCGTCTCAGGAGTCGACTGGAAGCTCTGAGCACGGAG
AGAGATGAGATTGAGGATGTAAAGTGTCAAGAAGACCAGAAGCTTCAAGTGCTGCTGACTCAGATCGAAA
GCAAGAAGCATCAGGTGGAAACAGCTTTTGAGAGGCTGCAGCAGGAGCTGGAGCAGCAGCGATGTCTCCT
GCTGGCCAGGCTGAGGGAGCTGGAGCAGCAGATTTGGAAGGAGAGGGATGAATATATCACAAAGGTCTCT
GAGGAAGTCACCCGGCTTGGAGCCCAGGTCAAGGAGCTGGAGGAGAAGTGTCAGCAGCCAGCAAGTGAGC
TTCTACAAGATGTCAGAGTCAACCAGAGCAGGTGTGAGATGAAGACTTTTGTGAGTCCTGAGGCCATTTC
TCCTGACCTTGTCAAGAAGATCCGTGATTTCCACAGGAAAATACTCACCCTCCCAGAGATGATGAGGATG
TTCTCAGAAAACTTGGCGCATCATCTGGAAATAGATTCAGGGGTCATCACTCTGGACCCTCAGACCGCCA
GCCGGAGCCTGGTTCTCTCGGAAGACAGGAAGTCAGTGAGGTACACCCGGCAGAAGAAGAGCCTGCCAGA
CAGCCCCCTGCGCTTCGACGGCCTCCCGGCGGTTCTGGGCTTCCCGGGCTTCTCCTCCGGGCGCCACCGC
TGGCAGGTTGACCTGCAGCTGGGCGACGGCGGCGGCTGCACGGTGGGGGTGGCCGGGGAGGGGGTGAGGA
GGAAGGGAGAGATGGGACTCAGCGCCGAGGACGGCGTCTGGGCCGTGATCATCTCGCACCAGCAGTGCTG
GGCCAGCACCTCCCCGGGCACCGACCTGCCGCTGAGCGAGATCCCGCGCGGCGTGAGAGTCGCCCTGGAC
TACGAGGCGGGGCAGGTGACCCTCCACAACGCCCAGACCCAGGAGCCCATCTTCACCTTCACTGCCTCTT
TCTCCGGCAAAGTCTTCCCTTTCTTTGCCGTCTGGAAAAAAGGTTCCTGCCTTACGCTGAAAGGCTGA

Translation (465 aa):
MPATPSLKVVHELPACTLCAGPLEDAVTIPCGHTFCRLCLPALSQMGAQSSGKILLCPLCQEEEQAETPM
APVPLGPLGETYCEEHGEKIYFFCENDAEFLCVFCREGPTHQAHTVGFLDEAIQPYRDRLRSRLEALSTE
RDEIEDVKCQEDQKLQVLLTQIESKKHQVETAFERLQQELEQQRCLLLARLRELEQQIWKERDEYITKVS
EEVTRLGAQVKELEEKCQQPASELLQDVRVNQSRCEMKTFVSPEAISPDLVKKIRDFHRKILTLPEMMRM
FSENLAHHLEIDSGVITLDPQTASRSLVLSEDRKSVRYTRQKKSLPDSPLRFDGLPAVLGFPGFSSGRHR
WQVDLQLGDGGGCTVGVAGEGVRRKGEMGLSAEDGVWAVIISHQQCWASTSPGTDLPLSEIPRGVRVALD
YEAGQVTLHNAQTQEPIFTFTASFSGKVFPFFAVWKKGSCLTLKG


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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