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Report for CCDS9338.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9338.1 Public Homo sapiens 13 MEDAG 24 110 108 CCDS HistoryNCBI Gene:84935Re-query CCDS DB by CCDS ID:9338.1Re-query CCDS DB by GeneID:84935See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9338.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000380482.9 ENSP00000369849.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000380482.9Link to Ensembl Protein Viewer:ENSP00000369849.4Re-query CCDS DB by Nucleotide ID:ENST00000380482Re-query CCDS DB by Protein ID:ENSP00000369849
Original member Current member NCBI NM_032849.4 NP_116238.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032849.4Link to Protein Sequence:NP_116238.3Re-query CCDS DB by Nucleotide ID:NM_032849Re-query CCDS DB by Protein ID:NP_116238Link to BLAST:NP_116238.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_116238.3 303 Q5VYS4-1 303 100% 0 0

Chromosomal Locations for CCDS 9338.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 30906516 30906793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 30917403 30917512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 30921014 30921126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 30921561 30921846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 30924311 30924435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (912 nt):
ATGGCGGGGGCGGCCTGCGAGCCGGTGGCCAGGCCGAGCCTGACCTCCATCTCGTCTGGGGAGCTTCGCA
GCCTGTGGACCTGCGACTGCGAGCTGGCCCTGCTGCCGCTGGCTCAGCTGCTGCGCCTGCAGCCCGGTGC
CTTCCAGCTGAGCGGCGACCAGCTCGTGGTGGCCAGGCCCGGGGAGCCGGCGGCGGCGCGGGGGGGCTTC
AACGTCTTCGGTGACGGCCTCGTGCGCCTCGACGGGCAGCTCTACCGCCTCAGCAGCTACATCAAGAGGT
ATGTGGAACTGACCAACTACTGTGATTATAAAGACTACAGGGAAACTATATTGAGCAAACCAATGTTGTT
CTTTATTAATGTACAGACCAAAAAAGACACCTCAAAAGAAAGGACGTACGCGTTTCTTGTAAACACGAGG
CACCCCAAGATAAGAAGACAGATAGAGCAAGGGATGGACATGGTCATCTCCTCAGTGATTGGAGAAAGTT
ACCGGCTTCAGTTTGATTTTCAAGAGGCAGTGAAGAATTTCTTCCCCCCAGGAAATGAAGTGGTTAATGG
AGAAAATTTAAGCTTTGCATATGAATTCAAAGCTGATGCATTATTTGATTTCTTCTATTGGTTTGGGCTC
AGTAATTCCGTTGTAAAAGTAAATGGAAAAGTTCTGAATTTGTCAAGTACAAGTCCAGAAAAGAAGGAGA
CGATTAAGTTATTTCTGGAAAAAATGAGTGAGCCTTTAATCCGAAGGAGCAGTTTCTCTGACCGAAAGTT
CAGTGTAACTTCCAGAGGTTCAATAGATGATGTTTTTAACTGCAATCTGTCACCCAGATCATCTCTGACA
GAGCCTCTTTTGGCAGAATTACCATTTCCAAGTGTTCTGGAATCTGAAGAGACACCCAACCAATTTATCT
GA

Translation (303 aa):
MAGAACEPVARPSLTSISSGELRSLWTCDCELALLPLAQLLRLQPGAFQLSGDQLVVARPGEPAAARGGF
NVFGDGLVRLDGQLYRLSSYIKRYVELTNYCDYKDYRETILSKPMLFFINVQTKKDTSKERTYAFLVNTR
HPKIRRQIEQGMDMVISSVIGESYRLQFDFQEAVKNFFPPGNEVVNGENLSFAYEFKADALFDFFYWFGL
SNSVVKVNGKVLNLSSTSPEKKETIKLFLEKMSEPLIRRSSFSDRKFSVTSRGSIDDVFNCNLSPRSSLT
EPLLAELPFPSVLESEETPNQFI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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