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Report for CCDS11732.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11732.1 Public Homo sapiens 17 TRIM65 24 110 108 CCDS HistoryNCBI Gene:201292Re-query CCDS DB by CCDS ID:11732.1Re-query CCDS DB by GeneID:201292See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11732.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000269383.8 ENSP00000269383.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000269383.8Link to Ensembl Protein Viewer:ENSP00000269383.3Re-query CCDS DB by Nucleotide ID:ENST00000269383Re-query CCDS DB by Protein ID:ENSP00000269383
Original member Current member NCBI NM_173547.4 NP_775818.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_173547.4Link to Protein Sequence:NP_775818.2Re-query CCDS DB by Nucleotide ID:NM_173547Re-query CCDS DB by Protein ID:NP_775818Link to BLAST:NP_775818.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775818.2 517 Q6PJ69 517 100% 0 0

Chromosomal Locations for CCDS 11732.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 75890779 75891347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75891813 75891878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75892011 75892185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75892267 75892500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75892755 75892850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75896524 75896937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1554 nt):
ATGGCCGCGCAGCTGCTGGAGGAGAAGCTGACCTGCGCCATCTGCCTGGGGCTCTACCAGGACCCAGTGA
CGCTGCCCTGCGGCCACAACTTCTGCGGGGCCTGCATCCGGGACTGGTGGGACCGCTGCGGAAAGGCGTG
CCCCGAGTGCCGGGAGCCCTTTCCCGACGGCGCCGAGCTGCGCCGCAACGTGGCCCTCAGCGGCGTGCTG
GAGGTGGTGCGCGCCGGGCCCGCCCGGGATCCCGGCCCCGATCCCGGCCCCGGCCCCGACCCTGCCGCGC
GCTGCCCCCGCCACGGGCGGCCGCTGGAGCTCTTCTGCCGGACCGAGGGCCGCTGTGTGTGCAGCGTGTG
CACCGTGCGCGAGTGTCGCCTCCACGAGCGGGCGCTGCTGGATGCCGAGCGCCTCAAGCGCGAGGCCCAG
CTGAGAGCCAGCCTGGAGGTTACCCAGCAGCAGGCCACCCAGGCCGAAGGCCAGCTACTAGAGCTGCGCA
AGCAAAGCAGCCAGATCCAGAACTCGGCCTGCATCTTGGCCTCCTGGGTCTCCGGCAAGTTCAGCAGCCT
GCTACAGGCCCTGGAAATACAGCACACGACAGCACTGAGGAGCATCGAGGTGGCCAAGACGCAGGCGCTG
GCACAGGCTCGAGACGAGGAGCAGCGGCTGCGGGTCCATTTGGAGGCTGTGGCTCGCCATGGCTGCAGGA
TCCGGGAGCTCCTGGAGCAGGTGGATGAGCAGACCTTCCTGCAGGAATCGCAGCTCCTCCAGCCCCCAGG
GCCTCTTGGGCCACTGACCCCTCTGCAGTGGGATGAAGACCAACAGCTGGGTGACCTGAAGCAGTTGCTA
AGCCGGCTGTGTGGCCTCCTCTTGGAAGAGGGGAGCCACCCTGGGGCACCAGCCAAGCCTGTGGACTTAG
CCCCCGTGGAGGCCCCAGGTCCCCTGGCACCGGTCCCAAGCACAGTTTGTCCACTGAGGAGGAAACTCTG
GCAGAATTATCGCAATCTGACCTTTGATCCAGTCAGCGCCAACCGTCACTTCTATCTGTCGCGCCAGGAC
CAGCAGGTGAAGCACTGTCGTCAGTCCCGGGGCCCAGGCGGGCCCGGCAGCTTTGAGCTCTGGCAGGTGC
AATGTGCCCAGAGCTTCCAGGCCGGGCACCACTACTGGGAGGTGCGCGCGTCAGACCACTCGGTGACACT
GGGCGTCTCCTACCCGCAACTGCCACGGTGCAGGCTGGGGCCCCACACAGACAACATTGGCCGGGGACCC
TGCTCCTGGGGGCTCTGCGTCCAGGAGGACAGCCTCCAGGCCTGGCACAACGGGGAAGCCCAGCGCCTCC
CAGGGGTGTCAGGGCGGCTCCTGGGCATGGATTTGGACCTGGCCTCAGGCTGCCTCACCTTCTACAGCCT
GGAGCCCCAGACCCAGCCCCTGTACACCTTCCATGCCCTCTTCAACCAGCCCCTCACCCCCGTCTTCTGG
CTCCTCGAGGGTAGGACCCTGACCCTGTGCCATCAGCCAGGGGCTGTGTTCCCTCTGGGGCCCCAGGAAG
AGGTGCTCAGCTGA

Translation (517 aa):
MAAQLLEEKLTCAICLGLYQDPVTLPCGHNFCGACIRDWWDRCGKACPECREPFPDGAELRRNVALSGVL
EVVRAGPARDPGPDPGPGPDPAARCPRHGRPLELFCRTEGRCVCSVCTVRECRLHERALLDAERLKREAQ
LRASLEVTQQQATQAEGQLLELRKQSSQIQNSACILASWVSGKFSSLLQALEIQHTTALRSIEVAKTQAL
AQARDEEQRLRVHLEAVARHGCRIRELLEQVDEQTFLQESQLLQPPGPLGPLTPLQWDEDQQLGDLKQLL
SRLCGLLLEEGSHPGAPAKPVDLAPVEAPGPLAPVPSTVCPLRRKLWQNYRNLTFDPVSANRHFYLSRQD
QQVKHCRQSRGPGGPGSFELWQVQCAQSFQAGHHYWEVRASDHSVTLGVSYPQLPRCRLGPHTDNIGRGP
CSWGLCVQEDSLQAWHNGEAQRLPGVSGRLLGMDLDLASGCLTFYSLEPQTQPLYTFHALFNQPLTPVFW
LLEGRTLTLCHQPGAVFPLGPQEEVLS


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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