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Report for CCDS33452.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33452.1 Public Homo sapiens 20 NINL 24 110 108 CCDS HistoryNCBI Gene:22981Re-query CCDS DB by CCDS ID:33452.1Re-query CCDS DB by GeneID:22981See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33452.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000278886.11 ENSP00000278886.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000278886.11Link to Ensembl Protein Viewer:ENSP00000278886.6Re-query CCDS DB by Nucleotide ID:ENST00000278886Re-query CCDS DB by Protein ID:ENSP00000278886
Original member Current member NCBI NM_025176.6 NP_079452.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_025176.6Link to Protein Sequence:NP_079452.3Re-query CCDS DB by Nucleotide ID:NM_025176Re-query CCDS DB by Protein ID:NP_079452Link to BLAST:NP_079452.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079452.3 1382 Q9Y2I6-1 1382 100% 0 0

Chromosomal Locations for CCDS 33452.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 25453451 25453642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 25455673 25455786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 25458383 25458529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 25461522 25461635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 25462383 25462541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 25467389 25467458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 25469991 25470095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 25476043 25477089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 25478923 25479206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 25480161 25480267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 25481968 25482100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 25489244 25489324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 25489875 25489985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 25491351 25491525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 25496663 25496803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 25498210 25498346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 25500840 25501010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 25503952 25504104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 25504888 25505078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 25510674 25510740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 25512834 25513006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 25517753 25517849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 25526408 25526587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4149 nt):
ATGGATGAAGAAGAGAACCACTATGTCTCGCAGCTCAGGGAAGTCTACAGCAGCTGCGACACCACGGGGA
CTGGCTTTCTGGACCGCCAGGAGCTGACCCAGCTCTGCCTTAAGCTTCACCTGGAGCAGCAGCTGCCCGT
CCTCCTGCAGACGCTTCTCGGAAACGACCATTTCGCCAGGGTTAACTTTGAGGAATTTAAGGAAGGTTTT
GTGGCTGTGTTGTCTTCAAATGCTGGTGTTCGCCCCTCAGATGAAGACAGTAGTTCTTTGGAATCAGCTG
CCTCCAGTGCCATCCCTCCAAAGTATGTGAATGGTTCTAAGTGGTATGGCCGTCGGAGCCGGCCTGAGCT
ATGTGACGCTGCCACAGAAGCCAGACGCGTGCCGGAGCAGCAAACCCAGGCCAGCCTGAAAAGTCACCTC
TGGCGCTCAGCGTCTCTGGAGAGCGTGGAGAGTCCCAAGTCAGATGAAGAGGCCGAGAGCACTAAAGAAG
CTCAGAATGAATTATTTGAAGCACAAGGACAGCTGCAGACCTGGGATTCTGAGGACTTTGGGAGCCCCCA
GAAGTCCTGCAGCCCCTCCTTTGACACCCCAGAGAGCCAGATCCGGGGCGTGTGGGAAGAGCTGGGGGTG
GGCAGCAGCGGACACCTGAGCGAGCAGGAGCTGGCTGTGGTCTGCCAGAGCGTCGGGCTCCAGGGACTCG
AGAAAGAGGAACTCGAAGACCTGTTTAACAAACTGGATCAAGACGGAGACGGCAAAGTGAGTCTTGAGGA
ATTCCAGCTTGGCCTCTTCAGTCATGAGCCCGCGCTACTTCTAGAGTCTTCCACTCGGGTTAAACCGAGC
AAGGCTTGGTCTCATTACCAGGTCCCAGAGGAGAGCGGCTGCCACACCACCACAACCTCATCCCTCGTGT
CCCTGTGCTCCAGCCTGCGCCTCTTCTCCAGCATTGACGATGGTTCTGGCTTCGCTTTTCCTGATCAGGT
CCTGGCCATGTGGACCCAGGAGGGGATTCAGAATGGCAGGGAGATCTTGCAGAGCCTGGACTTCAGCGTG
GACGAGAAGGTGAACCTTCTGGAGCTGACCTGGGCCCTTGACAACGAGCTCATGACAGTGGACAGTGCCG
TCCAGCAGGCAGCCCTGGCCTGCTACCACCAGGAGCTGAGCTACCAGCAAGGGCAGGTGGAGCAGCTGGC
AAGGGAGCGTGACAAGGCAAGGCAGGACCTGGAGAGGGCCGAGAAGAGGAACCTGGAGTTTGTGAAAGAG
ATGGACGACTGCCACTCCACCCTGGAGCAGCTCACGGAGAAGAAAATCAAGCATCTGGAGCAGGGGTACC
GGGAAAGGCTGAGCCTCCTGCGGTCTGAGGTGGAGGCGGAGCGAGAGCTGTTCTGGGAGCAGGCCCACAG
GCAGAGGGCCGCGCTGGAGTGGGACGTGGGGCGCCTGCAGGCTGAGGAGGCTGGCCTCCGCGAGAAGCTG
ACCCTGGCCCTGAAGGAAAACAGTCGCCTACAGAAGGAGATTGTGGAAGTGGTGGAAAAGCTTTCGGATT
CGGAGAGGCTGGCCCTGAAGCTGCAGAAGGACCTGGAGTTTGTGCTGAAGGACAAGCTGGAGCCACAGAG
TGCAGAGCTCCTGGCCCAGGAGGAGCGGTTCGCAGCAGTCCTGAAGGAATACGAGCTCAAGTGCCGGGAC
CTGCAGGACCGCAACGATGAGCTGCAAGCTGAGCTGGAAGGCCTGTGGGCGCGGCTGCCCAAGAACCGGC
ACAGCCCCTCATGGAGCCCGGATGGGCGCAGACGGCAGCTCCCTGGACTCGGCCCAGCAGGCATTTCATT
CCTGGGTAATTCTGCTCCAGTGAGTATAGAAACGGAGCTGATGATGGAGCAGGTAAAGGAGCATTACCAA
GACCTCAGGACCCAGCTGGAGACCAAGGTAAATTACTACGAAAGGGAAATTGCGGCACTGAAAAGGAACT
TTGAGAAGGAGAGGAAGGACATGGAGCAGGCTCGCAGGCGCGAGGTCAGCGTGCTGGAGGGTCAGAAGGC
CGACCTGGAGGAGCTCCACGAGAAGTCTCAGGAGGTCATCTGGGGCCTGCAGGAGCAGCTGCAGGACACA
GCCCGCGGCCCCGAGCCTGAGCAGATGGGCCTGGCACCCTGCTGCACCCAGGCACTGTGTGGCCTGGCCC
TGCGGCATCACAGCCACCTGCAGCAGATCAGGAGAGAGGCTGAGGCGGAGCTGAGTGGAGAGCTGTCGGG
GCTGGGAGCCCTGCCCGCTCGCAGAGACCTGACCTTGGAGCTGGAGGAGCCGCCGCAGGGACCCCTGCCA
CGCGGGAGCCAGAGGTCGGAGCAGCTGGAGCTGGAGAGGGCACTGAAGCTGCAGCCCTGTGCGAGCGAGA
AGCGCGCCCAGATGTGCGTATCGTTGGCCCTCGAGGAGGAGGAGTTGGAGCTTGCCCGCGGGAAGCGAGT
GGACGGGCCCTCCCTGGAAGCAGAGATGCAGGCCCTGCCGAAAGATGGGCTGGTGGCAGGAAGTGGCCAG
GAGGGCACACGTGGCCTCCTACCACTGCGTCCGGGCTGTGGGGAGCGGCCACTGGCCTGGCTGGCCCCAG
GTGATGGCAGAGAGTCTGAGGAGGCGGCAGGAGCCGGGCCTCGCCGCAGGCAAGCCCAGGACACAGAAGC
TACGCAGAGCCCGGCCCCCGCCCCTGCCCCGGCATCCCACGGCCCCTCAGAGAGGTGGTCACGCATGCAG
CCCTGTGGAGTGGATGGGGATATTGTCCCAAAGGAGCCAGAGCCTTTCGGCGCGAGCGCAGCGGGGCTGG
AGCAGCCTGGAGCCCGGGAGCTGCCTCTGCTGGGAACAGAGAGAGACGCCTCGCAAACCCAGCCACGGAT
GTGGGAGCCACCCCTGAGGCCGGCCGCTTCGTGCAGGGGACAGGCTGAGAGGCTACAGGCCATTCAGGAA
GAGCGAGCACGAAGCTGGAGCAGGGGCACCCAGGAGCAGGCCTCGGAGCAGCAGGCCCGGGCCGAGGGCG
CCCTGGAGCCTGGGTGTCACAAGCACAGTGTGGAGGTTGCCAGGAGAGGGTCCTTGCCATCCCACCTCCA
GCTCGCAGACCCGCAGGGTTCCTGGCAGGAGCAGCTTGCTGCCCCAGAAGAGGGGGAGACCAAAATAGCG
CTGGAGAGAGAGAAGGATGACATGGAAACCAAACTTCTACATCTGGAAGACGTCGTCCGGGCTCTGGAGA
AACATGTAGATTTGAGAGAGAACGACAGACTGGAGTTCCATAGACTTTCTGAAGAAAACACTTTGTTGAA
AAACGATCTGGGAAGGGTTCGGCAAGAGCTTGAAGCTGCAGAAAGTACTCACGATGCACAGAGGAAGGAA
ATTGAGGTTTTAAAGAAAGACAAGGAAAAGGCCTGCTCTGAGATGGAGGTGCTCAACAGACAGAATCAGA
ACTACAAGGATCAATTATCCCAGCTCAATGTCAGGGTTCTTCAACTGGGACAGGAGGCTTCTACCCACCA
GGCCCAAAACGAGGAGCATCGTGTGACCATTCAGATGTTAACACAGAGCCTGGAGGAGGTGGTTCGCAGT
GGGCAGCAGCAGAGTGACCAAATCCAAAAACTTAGAGTTGAACTTGAATGCCTGAATCAGGAACATCAGA
GCCTGCAGCTGCCATGGTCAGAGCTGACCCAGACCCTTGAGGAAAGTCAAGACCAGGTGCAGGGAGCTCA
CCTGAGGCTGAGGCAGGCCCAGGCCCAGCACTTGCAGGAGGTCCGGCTGGTGCCCCAGGACCGTGTGGCC
GAGCTGCATCGCCTGCTCAGCCTTCAGGGAGAGCAGGCCAGGAGGCGCCTGGATGCACAGCGGGAAGAAC
ATGAGAAACAGCTGAAAGCCACAGAAGAGCGGGTGGAAGAGGCGGAGATGATTCTGAAGAATATGGAAAT
GCTCCTCCAAGAGAAAGTGGATAAGCTGAAGGAGCAGTTTGAAAAGAACACGAAGTCCGACCTGCTGCTG
AAGGAGCTGTACGTGGAGAACGCCCACCTGGTGAGAGCACTTCAGGCCACCGAGGAGAAGCAGCGAGGCG
CCGAGAAACAAAGCCGCCTCTTGGAAGAAAAAGTTCGCGCTCTCAACAAACTCGTCAGTAGGATTGCCCC
CGCAGCCCTCTCTGTGTAA

Translation (1382 aa):
MDEEENHYVSQLREVYSSCDTTGTGFLDRQELTQLCLKLHLEQQLPVLLQTLLGNDHFARVNFEEFKEGF
VAVLSSNAGVRPSDEDSSSLESAASSAIPPKYVNGSKWYGRRSRPELCDAATEARRVPEQQTQASLKSHL
WRSASLESVESPKSDEEAESTKEAQNELFEAQGQLQTWDSEDFGSPQKSCSPSFDTPESQIRGVWEELGV
GSSGHLSEQELAVVCQSVGLQGLEKEELEDLFNKLDQDGDGKVSLEEFQLGLFSHEPALLLESSTRVKPS
KAWSHYQVPEESGCHTTTTSSLVSLCSSLRLFSSIDDGSGFAFPDQVLAMWTQEGIQNGREILQSLDFSV
DEKVNLLELTWALDNELMTVDSAVQQAALACYHQELSYQQGQVEQLARERDKARQDLERAEKRNLEFVKE
MDDCHSTLEQLTEKKIKHLEQGYRERLSLLRSEVEAERELFWEQAHRQRAALEWDVGRLQAEEAGLREKL
TLALKENSRLQKEIVEVVEKLSDSERLALKLQKDLEFVLKDKLEPQSAELLAQEERFAAVLKEYELKCRD
LQDRNDELQAELEGLWARLPKNRHSPSWSPDGRRRQLPGLGPAGISFLGNSAPVSIETELMMEQVKEHYQ
DLRTQLETKVNYYEREIAALKRNFEKERKDMEQARRREVSVLEGQKADLEELHEKSQEVIWGLQEQLQDT
ARGPEPEQMGLAPCCTQALCGLALRHHSHLQQIRREAEAELSGELSGLGALPARRDLTLELEEPPQGPLP
RGSQRSEQLELERALKLQPCASEKRAQMCVSLALEEEELELARGKRVDGPSLEAEMQALPKDGLVAGSGQ
EGTRGLLPLRPGCGERPLAWLAPGDGRESEEAAGAGPRRRQAQDTEATQSPAPAPAPASHGPSERWSRMQ
PCGVDGDIVPKEPEPFGASAAGLEQPGARELPLLGTERDASQTQPRMWEPPLRPAASCRGQAERLQAIQE
ERARSWSRGTQEQASEQQARAEGALEPGCHKHSVEVARRGSLPSHLQLADPQGSWQEQLAAPEEGETKIA
LEREKDDMETKLLHLEDVVRALEKHVDLRENDRLEFHRLSEENTLLKNDLGRVRQELEAAESTHDAQRKE
IEVLKKDKEKACSEMEVLNRQNQNYKDQLSQLNVRVLQLGQEASTHQAQNEEHRVTIQMLTQSLEEVVRS
GQQQSDQIQKLRVELECLNQEHQSLQLPWSELTQTLEESQDQVQGAHLRLRQAQAQHLQEVRLVPQDRVA
ELHRLLSLQGEQARRRLDAQREEHEKQLKATEERVEEAEMILKNMEMLLQEKVDKLKEQFEKNTKSDLLL
KELYVENAHLVRALQATEEKQRGAEKQSRLLEEKVRALNKLVSRIAPAALSV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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