NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS1495.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1495.1 Public Homo sapiens 1 HHAT 24 110 108 CCDS HistoryNCBI Gene:55733Re-query CCDS DB by CCDS ID:1495.1Re-query CCDS DB by GeneID:55733See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1495.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000261458.8 ENSP00000261458.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000261458.8Link to Ensembl Protein Viewer:ENSP00000261458.3Re-query CCDS DB by Nucleotide ID:ENST00000261458Re-query CCDS DB by Protein ID:ENSP00000261458
Original member Current member EBI ENST00000367010.5 ENSP00000355977.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000367010.5Link to Ensembl Protein Viewer:ENSP00000355977.1Re-query CCDS DB by Nucleotide ID:ENST00000367010Re-query CCDS DB by Protein ID:ENSP00000355977
Original member Current member EBI ENST00000413764.6 ENSP00000416845.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000413764.6Link to Ensembl Protein Viewer:ENSP00000416845.2Re-query CCDS DB by Nucleotide ID:ENST00000413764Re-query CCDS DB by Protein ID:ENSP00000416845
Original member Current member NCBI NM_001122834.4 NP_001116306.1 Accepted alive Link to Nucleotide Sequence:NM_001122834.4Link to Protein Sequence:NP_001116306.1Re-query CCDS DB by Nucleotide ID:NM_001122834Re-query CCDS DB by Protein ID:NP_001116306Link to BLAST:NP_001116306.1
Original member Current member NCBI NM_001170580.3 NP_001164051.1 Accepted alive Link to Nucleotide Sequence:NM_001170580.3Link to Protein Sequence:NP_001164051.1Re-query CCDS DB by Nucleotide ID:NM_001170580Re-query CCDS DB by Protein ID:NP_001164051Link to BLAST:NP_001164051.1
Original member Current member NCBI NM_018194.6 NP_060664.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018194.6Link to Protein Sequence:NP_060664.2Re-query CCDS DB by Nucleotide ID:NM_018194Re-query CCDS DB by Protein ID:NP_060664Link to BLAST:NP_060664.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001116306.1 493 Q5VTY9-1 493 100% 0 0
NP_001164051.1 493 Q5VTY9-1 493 100% 0 0
NP_060664.2 493 Q5VTY9-1 493 100% 0 0

Chromosomal Locations for CCDS 1495.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 210348976 210349066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 210362852 210362919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 210387468 210387581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 210400468 210400662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 210404464 210404679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 210418154 210418325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 210464505 210464655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 210513153 210513188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 210587898 210588099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 210623526 210623670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 210674288 210674379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1482 nt):
ATGCTGCCCCGATGGGAACTGGCACTTTACCTACTTGCCTCACTAGGCTTCCACTTCTATTCCTTCTATG
AAGTTTACAAAGTCTCCAGAGAACACGAAGAGGAGCTGGACCAGGAATTTGAGCTGGAGACTGACACTTT
ATTTGGAGGATTAAAGAAGGATGCGACCGACTTTGAGTGGAGCTTCTGGATGGAATGGGGGAAGCAGTGG
CTGGTGTGGCTTCTCCTTGGCCACATGGTAGTGTCTCAAATGGCCACACTGCTGGCAAGAAAGCACAGAC
CCTGGATTCTCATGCTCTATGGGATGTGGGCCTGCTGGTGTGTGCTGGGGACCCCTGGTGTGGCTATGGT
TTTGCTCCATACCACCATCTCTTTCTGCGTGGCCCAGTTCCGGTCTCAGCTCCTGACGTGGCTCTGTTCT
CTCCTCCTCCTCTCCACACTGAGGCTGCAGGGTGTGGAAGAAGTTAAGAGAAGGTGGTACAAGACAGAAA
ACGAGTACTACCTGCTGCAGTTCACGCTGACCGTTCGCTGCCTGTACTACACCAGCTTCAGCCTGGAGCT
CTGCTGGCAGCAGCTGCCTGCTGCATCGACCTCCTACTCCTTTCCCTGGATGCTGGCCTATGTCTTTTAT
TATCCAGTCTTACACAATGGGCCCATCCTCAGCTTCTCGGAGTTCATCAAACAGATGCAGCAGCAGGAGC
ATGACTCCCTGAAGGCCAGCCTGTGTGTCCTGGCCCTGGGGCTGGGCCGCCTTCTTTGCTGGTGGTGGCT
GGCCGAGCTGATGGCTCACCTGATGTACATGCATGCCATCTACAGCAGCATCCCCCTCCTGGAGACTGTC
TCTTGTTGGACCTTAGGAGGACTGGCGTTAGCCCAGGTGCTCTTTTTCTACGTGAAGTACTTGGTGCTCT
TTGGCGTGCCTGCTCTGCTCATGCGCCTGGATGGACTCACTCCACCCGCCCTCCCCCGCTGCGTGAGCAC
CATGTTCAGTTTCACCGGGATGTGGAGGTATTTTGATGTTGGACTGCATAATTTCTTAATCAGGTATGTG
TACATTCCAGTGGGCGGGTCCCAGCATGGCCTGCTGGGGACACTGTTTTCCACGGCGATGACATTTGCAT
TTGTGAGCTACTGGCATGGCGGCTACGACTACCTCTGGTGCTGGGCAGCGCTCAACTGGCTGGGAGTCAC
TGTGGAGAATGGAGTCCGGAGGCTGGTGGAGACTCCCTGCATCCAGGACAGTCTGGCCCGATACTTCTCC
CCACAAGCTCGCCGTCGATTCCACGCTGCCCTTGCTTCTTGTTCCACCTCGATGCTGATCCTGTCCAACC
TGGTATTTCTTGGGGGCAATGAGGTTGGGAAAACCTACTGGAATAGGATCTTCATACAAGGCTGGCCTTG
GGTGACCCTCTCTGTCCTGGGATTCCTGTACTGCTACTCCCACGTGGGCATTGCCTGGGCCCAGACCTAC
GCCACGGACTAA

Translation (493 aa):
MLPRWELALYLLASLGFHFYSFYEVYKVSREHEEELDQEFELETDTLFGGLKKDATDFEWSFWMEWGKQW
LVWLLLGHMVVSQMATLLARKHRPWILMLYGMWACWCVLGTPGVAMVLLHTTISFCVAQFRSQLLTWLCS
LLLLSTLRLQGVEEVKRRWYKTENEYYLLQFTLTVRCLYYTSFSLELCWQQLPAASTSYSFPWMLAYVFY
YPVLHNGPILSFSEFIKQMQQQEHDSLKASLCVLALGLGRLLCWWWLAELMAHLMYMHAIYSSIPLLETV
SCWTLGGLALAQVLFFYVKYLVLFGVPALLMRLDGLTPPALPRCVSTMFSFTGMWRYFDVGLHNFLIRYV
YIPVGGSQHGLLGTLFSTAMTFAFVSYWHGGYDYLWCWAALNWLGVTVENGVRRLVETPCIQDSLARYFS
PQARRRFHAALASCSTSMLILSNLVFLGGNEVGKTYWNRIFIQGWPWVTLSVLGFLYCYSHVGIAWAQTY
ATD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH