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Report for CCDS41500.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41500.1 Public Homo sapiens 10 JCAD 24 110 108 CCDS HistoryNCBI Gene:57608Re-query CCDS DB by CCDS ID:41500.1Re-query CCDS DB by GeneID:57608See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41500.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000375377.2 ENSP00000364526.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000375377.2Link to Ensembl Protein Viewer:ENSP00000364526.1Re-query CCDS DB by Nucleotide ID:ENST00000375377Re-query CCDS DB by Protein ID:ENSP00000364526
Original member Current member NCBI NM_001350022.2 NP_001336951.1 Accepted alive Link to Nucleotide Sequence:NM_001350022.2Link to Protein Sequence:NP_001336951.1Re-query CCDS DB by Nucleotide ID:NM_001350022Re-query CCDS DB by Protein ID:NP_001336951Link to BLAST:NP_001336951.1
Original member Current member NCBI NM_020848.4 NP_065899.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020848.4Link to Protein Sequence:NP_065899.1Re-query CCDS DB by Nucleotide ID:NM_020848Re-query CCDS DB by Protein ID:NP_065899Link to BLAST:NP_065899.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001336951.1 1359 Q9P266 1359 100% 0 0
NP_065899.1 1359 Q9P266 1359 100% 0 0

Chromosomal Locations for CCDS 41500.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 30017883 30017917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 30026103 30029866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 30047532 30047812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4080 nt):
ATGTACAGTGTAGAAGACCTCCTGATCTCTCATGGATACAAGCTGTCAAGAGACCCCCCAGCATCACGCG
AGGATAACCCCAAGGGGCGCCAGGCAGCGAGGACTGGGACACGAGCAGGCCAGGGCCTGCAGAACGGGCA
TGAGGATGGCCCTGCGGCCCTCGCACATCGTAAGACGTCCGCGGGGAAAGGACATGTGAGTGACTCCGAA
AGCCGCCGCAGCACACCGAGAGGCCACGGGGAGCCCCAGAGCACTTCTGCTTCCAGAACCTCGGAGGCGG
GGTTTTGTAATCAACCCCCCTCAGCATGGTCCTCTCATCCCCCGACTGGTAACGACCAAGCCTACCGGAG
AAGAGGACGGCAAGAAGCCAGGAGCCAGAAGCCGAGGGAGCACGAAAACCTGGAGGCCAGAGGAATGGCC
CAAGCCCACAGCCTGCCTGTCCACGTGAGGGAGGGTCCATGGGAAGTTGGAGGAAGGTCAGAGCATGTGA
TGAAGAAGCCAGTTTGGGAAGAAGAATTGCGAATGTCAGGTCCTGCCAAGTGGCAGAACGTCAGCCTGGA
AAGCTGGAACCAGCCAAGGAAATTAGGGAGGCAGATGTCTGATGGAGATGGGGAGAGACTGTTTCAAGAC
CTGTACCCATTCATTCAAGGAGAACATGTGTTGAATTCTCAAAACAAAGGGAAGTCTCGCTCACTGCCTA
GAGTTCTTTCCCCCGAGAGCCTGAGTTGCACGGAAATTCCCATTCCATTAAATGAAAGACATTCACCTAA
AATGCCACCGTATCCTCCCACTTGCGCACCAAATTTGGACTCCACGAGGAATTCTGAGAAGAGTGGCTGC
TCAGCCCCATTTCCCCGGCCTAAGTTTGGGAGGCCCCTCAAGCCCCCATCTTACAGCTCGCACCAGCAGT
CTAGGGGAGGAGCGGACAGCAGTGACTCTCAGGACAGCCAGCAGATGGACGCCTATGTCCCCAGGCATGA
GCTCTGCCTGTCAGACCCTGGATTGGAACCTCCAGTGTACGTGCCTCCGCCCTCATACAGATCGCCCCCG
CAGAACATCCCAAACCCCTACTTGGAAGACACGGTGCCCATAAATGTGTGTGGCGGTCACAGTCAACAGC
AGTCTCCGACCGAGAAGGCTGGGGCCAGCGGTCAGCCTCCTTCAGGCCCCCCTGGAACTGGGAATGAGTA
TGGTGTGAGCCCCCGCTTGCCTCAGGGGCTCCCCGCACATCCCCGACCTGTCACTGCCTATGACGGCTTC
GTTCAGTACATTCCCTTTGATGATCCACGGTTACGACATTTTAAACTAGCTCAGCCCCAGGGTTTCTGTG
AAGACATAAAGCTTGACGATAAATCATATAACTCCAGTCCTGTCACTGCTCAAGAGCCGGCTCATGGAGG
AATGCAGCCTGATGGTGCCATTTGGAATCCACAGAGCTTAATACCCCCGTCGGGGGATGAGAGAGGCCTG
GTCTTGGCCGATTCCAGCCCCCGGTGGCTGTGGGGCCAGCCCCCCGGGGATGGGGAAAACAGTGGCCTCC
CCAACCAGAGAGACCGCTGTGTGGCAAGGGGACAGTGGCCTGATGTGAGAGGCAGCCAGCACGGGCACAC
TGGAAGACAAGTTTCCTCCCCTTACTCACAGGGCGAGAGCACCTGCGAAACTCAAACCAAGCTCAAAAAG
TTCCAAACTGGGACTCGGACCAAGAAAAGTTCAAAGAAAAAAATGAACGAGACTATATTTTGCTTGGTTT
CTATCCCAGTGAAATCAGAATCACATCTGCCAGATAGAGATATGGACAACAATGACTTAAAGCCCAGTGC
TGATCAAAAGAATGGGTCTGATAAGAGCCCGGCTCTGCAAGAACAGAGTCTGCTGAGCATGTCTTCCACC
GACCTGGAGCTGCAGGCCCTCACAGGAAGCATGGGTGGGAGAACGGAGTTCCAAAAACAAGATCTAGGGG
AACCAGAAGAAGACAGACAAACAAATGACCTCAGTTTCATCCACCTTACAAAGCACAGAGAACTCAAGCA
TTCTGGCTCTTGGCCAGGGCACCGGTACAGAGATCAGCAAACACAAACCAGTTTCTCCGAGGAGCCCCAA
AGTTCGCAGCTGCTCCCTGGTGCAAAGCTGGGAGGGCCGAGTCGTGCAGCATTGAGTCCAAAATGTTCAG
ACCCTGCTGCCTCCGAAGCTCAGACGCACACAGCATTCCCTACCGGTGATCACAAACAGAGGCCAAGTGC
CCGTAACCTGAAAGGTCACAGGTCCCTCAGCCCATCCAGCAACAGTGCGTTCTCAAGGACTTCCTTGTCC
GTGGACCAGGCACCGACGCCAAAAGCAGGCCGAAGTCAGCCCTGCGTGGATGTCCACGGGCTTGGAGCCC
ACCCTGGGCCTAAGCGGGAGGTGGTGAAGGGGGAGCCCACGGGCCCTTGCAACAGTAAACAACTCTTTGG
GCAGTTTCTCCTGAAACCGGTCAGCCGTCGTCCCTGGGATTTGATCAGTCAGTTAGAAAGTTTTAACAAG
GAGCTCCAGGAAGAGGAAGAAAGCAGCAGTAGCAGCAGCAGCAGCAGCAGCAGCAGTGAGGAGAGTGAGG
CGGAGCCGCAGCAGGAGAACCGTGCTCACTGCAGACAGGAGGATGTGGGCTTCCGCGGAAACAGCCCGGA
AATGAGGGTTGAGCCACAGCCGAGGATGTGGGTGCCGGAGAGCCCTGTGTGTAGGTCGGGAAGAGGTGAG
AGTAAGTCTGAGAGCTGGAGTGAGGAGCTGCAGCCTGGCCACCCACGTGCCTGGCCTCCATCCCCGGGCC
GCTTTCGCGTGGAAGAAGGTGGCGGTGCACCTTTCTGCTCAGCAGATGGAAGCACGAGTGCAGAGAAGAG
ACACCTGGAGGTTAGCAACGGAATGGACGAGCTGGCAGGTAGCCCATTTCCTGTGACGAGAATGTCTTCA
AGATCAAGTGACGCAAAACCACTGCCCGCGTCCTATCCAGCTGAACCTAGGGAGCCCCAGGAAAGTCCGA
AAATCACCAGTGCTTTCAGCTCTGTGAAACCAAGTGAAGCGGTCCCTCGGAAGTTTGACAGTGGTGGAGA
GAGGGGGGCAGGGCTCCCACTGTCCCTGTCTAACAAGAACCGAGGGCTCTCAGCTCCAGACTTACGGTCT
GTGGGGCTCACCCCTGGGCAAGAACAGGGTGCCAGTGAGCTAGAGGGGTCTTTGGGTGAAGCAAGCACAA
TAGAAATCCCCCCAGGTGAGTCCTTGCAAGCCAGGGCTGCAAGGATCCTGGGCATTGAGGTGGCGGTGGA
GTCCCTCCTGCCGGGCATCCGGAGAGCGGGACAGAACCAGCCTGCTGAGCCCGATGCAAGTGCCTGCACC
CCAGAGTCCCCCCAGGAAGAGTTGCTATCTCGCCCAGCACCGGCAGATGTCCCCAGGGTGTCCACTGATG
CCTTTTATGGCAGGAGGAAGTGCGGCTGGACCAAGAGCCCTCTCTTTGTAGGGGACAGGGACAGTGCCAG
GCGGGCTCCTCAGGCTTTTGAGCACTCAGATGTGGACGGGGTTGTCACCAGCACAGACCCTGTCCCTGAG
CCTGAGCCCAGCCCCTTGGAGTCCAAGTTCTTCGAACAAAAGGATGTGGAAACAAAACCACCCTTCAGGT
CCACTTTATTCCATTTTGTAGAAAGAACCCCAAGTGTGGCAGGCTCTGAAAAGAGACTTAGAAGCCCTTC
CAAAGTGATTGAAAGTTTACAAGAGAAACTGGCCTCCCCGCCTAGGAGAGCAGACCCTGACCGCCTGATG
AGAATGAAAGAGGTGAGCTCAGTGTCACGGATGAGAGTCCTGAGCTTCAGGAATGCCGACTCCCAGGAGG
ACGCCGAGGAATTGAAGGCCACCACAAGGGGCCAGGCCGGGCTCCCGGGAGGCCTTGTGTCTCCTGGCAG
TGGGGACCGTGCCCAGAGATTGGGCCACTCACTCTCTGTGTCCAAGGACAGCATCTCCAGGGAAGAGAAG
GAGCATCCGGCAGCACAAAAGGAGAAGAGCATGGATCAAGACTTCTGGTGCCCAGATTCCTATGACCCTA
GCAGAGTGGAGAGGGTGTGA

Translation (1359 aa):
MYSVEDLLISHGYKLSRDPPASREDNPKGRQAARTGTRAGQGLQNGHEDGPAALAHRKTSAGKGHVSDSE
SRRSTPRGHGEPQSTSASRTSEAGFCNQPPSAWSSHPPTGNDQAYRRRGRQEARSQKPREHENLEARGMA
QAHSLPVHVREGPWEVGGRSEHVMKKPVWEEELRMSGPAKWQNVSLESWNQPRKLGRQMSDGDGERLFQD
LYPFIQGEHVLNSQNKGKSRSLPRVLSPESLSCTEIPIPLNERHSPKMPPYPPTCAPNLDSTRNSEKSGC
SAPFPRPKFGRPLKPPSYSSHQQSRGGADSSDSQDSQQMDAYVPRHELCLSDPGLEPPVYVPPPSYRSPP
QNIPNPYLEDTVPINVCGGHSQQQSPTEKAGASGQPPSGPPGTGNEYGVSPRLPQGLPAHPRPVTAYDGF
VQYIPFDDPRLRHFKLAQPQGFCEDIKLDDKSYNSSPVTAQEPAHGGMQPDGAIWNPQSLIPPSGDERGL
VLADSSPRWLWGQPPGDGENSGLPNQRDRCVARGQWPDVRGSQHGHTGRQVSSPYSQGESTCETQTKLKK
FQTGTRTKKSSKKKMNETIFCLVSIPVKSESHLPDRDMDNNDLKPSADQKNGSDKSPALQEQSLLSMSST
DLELQALTGSMGGRTEFQKQDLGEPEEDRQTNDLSFIHLTKHRELKHSGSWPGHRYRDQQTQTSFSEEPQ
SSQLLPGAKLGGPSRAALSPKCSDPAASEAQTHTAFPTGDHKQRPSARNLKGHRSLSPSSNSAFSRTSLS
VDQAPTPKAGRSQPCVDVHGLGAHPGPKREVVKGEPTGPCNSKQLFGQFLLKPVSRRPWDLISQLESFNK
ELQEEEESSSSSSSSSSSSEESEAEPQQENRAHCRQEDVGFRGNSPEMRVEPQPRMWVPESPVCRSGRGE
SKSESWSEELQPGHPRAWPPSPGRFRVEEGGGAPFCSADGSTSAEKRHLEVSNGMDELAGSPFPVTRMSS
RSSDAKPLPASYPAEPREPQESPKITSAFSSVKPSEAVPRKFDSGGERGAGLPLSLSNKNRGLSAPDLRS
VGLTPGQEQGASELEGSLGEASTIEIPPGESLQARAARILGIEVAVESLLPGIRRAGQNQPAEPDASACT
PESPQEELLSRPAPADVPRVSTDAFYGRRKCGWTKSPLFVGDRDSARRAPQAFEHSDVDGVVTSTDPVPE
PEPSPLESKFFEQKDVETKPPFRSTLFHFVERTPSVAGSEKRLRSPSKVIESLQEKLASPPRRADPDRLM
RMKEVSSVSRMRVLSFRNADSQEDAEELKATTRGQAGLPGGLVSPGSGDRAQRLGHSLSVSKDSISREEK
EHPAAQKEKSMDQDFWCPDSYDPSRVERV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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