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Report for CCDS3728.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3728.1 Public Homo sapiens 4 BBS12 24 110 108 CCDS HistoryNCBI Gene:166379Re-query CCDS DB by CCDS ID:3728.1Re-query CCDS DB by GeneID:166379See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3728.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000314218.8 ENSP00000319062.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000314218.8Link to Ensembl Protein Viewer:ENSP00000319062.3Re-query CCDS DB by Nucleotide ID:ENST00000314218Re-query CCDS DB by Protein ID:ENSP00000319062
Original member Current member EBI ENST00000542236.5 ENSP00000438273.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000542236.5Link to Ensembl Protein Viewer:ENSP00000438273.1Re-query CCDS DB by Nucleotide ID:ENST00000542236Re-query CCDS DB by Protein ID:ENSP00000438273
Original member Current member NCBI NM_001178007.2 NP_001171478.1 Accepted alive Link to Nucleotide Sequence:NM_001178007.2Link to Protein Sequence:NP_001171478.1Re-query CCDS DB by Nucleotide ID:NM_001178007Re-query CCDS DB by Protein ID:NP_001171478Link to BLAST:NP_001171478.1
Original member Current member NCBI NM_152618.3 NP_689831.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152618.3Link to Protein Sequence:NP_689831.2Re-query CCDS DB by Nucleotide ID:NM_152618Re-query CCDS DB by Protein ID:NP_689831Link to BLAST:NP_689831.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171478.1 710 Q6ZW61 710 100% 0 0
NP_689831.2 710 Q6ZW61 710 100% 0 0

Chromosomal Locations for CCDS 3728.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 122741893 122744025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2133 nt):
ATGGTGATGGCTTGCAGAGTCGTAAACAAAAGAAGACACATGGGACTTCAACAACTTTCATCATTCGCGG
AAACAGGAAGAACTTTCCTAGGCCCACTAAAATCATCCAAATTTATTATAGATGAAGAATGTCATGAAAG
TGTATTAATCAGTTCAACAGTAAGGCTTCTTGAAAGTTTGGATTTAACCAGTGCAGTGGGACAACTTCTC
AATGAAGCAGTTCAAGCACAAAACAACACATATAGAACTGGAATCAGTACTCTTTTGTTTCTTGTTGGTG
CTTGGAGCAGTGCAGTTGAAGAATGTCTTCATCTTGGTGTCCCCATTTCCATAATAGTATCAGTAATGTC
AGAAGGCTTAAACTTTTGTAGTGAAGAGGTAGTTTCTCTTCATGTACCTGTTCACAATATATTTGACTGT
ATGGACAGCACAAAAACATTTTCTCAACTTGAAACATTTAGTGTAAGTTTGTGTCCTTTTCTACAGGTCC
CTTCAGATACTGATTTGATAGAGGAATTGCATGGTCTCAAAGATGTTGCCTCTCAAACACTGACCATTTC
CAACCTTTCTGGGAGACCTCTTAAATCATATGAATTATTTAAACCTCAGACAAAGGTTGAAGCAGATAAC
AACACATCACGAACTCTGAAAAACAGCCTGCTTGCAGATACCTGCTGCAGACAGTCAATACTAATCCACA
GTAGGCATTTTAATAGGACAGATAATACTGAAGGGGTAAGCAAACCAGATGGATTTCAAGAACATGTTAC
AGCTACTCACAAAACTTACAGATGTAATGATTTGGTAGAGTTGGCAGTAGGCTTGAGTCATGGAGATCAC
AGCAGCATGAAGTTAGTAGAAGAAGCAGTACAGCTGCAATATCAGAATGCTTGTGTGCAACAAGGCAACT
GTACAAAACCATTTATGTTTGACATTTCAAGAATTTTCACTTGCTGTCTACCAGGCTTACCTGAAACTTC
TTCTTGTGTTTGTCCAGGATATATCACTGTTGTGTCAGTATCTAATAATCCTGTGATCAAGGAATTGCAG
AATCAGCCTGTGCGAATAGTTCTCATTGAGGGTGACCTCACAGAGAATTACCGCCACCTGGGATTTAATA
AGTCTGCAAATATTAAAACAGTATTAGATAGCATGCGGCTTCAAGAAGACAGCTCAGAAGAACTGTGGGC
AAATCACGTGTTACAGGTGTTAATCCAGTTCAAGGTGAACCTTGTCCTGGTACAAGGAAATGTGTCCGAA
CGCTTAATTGAAAAATGTATAAACAGTAAGCGGTTGGTAATCGGCTCAGTGAATGGCAGTGTGATGCAGG
CTTTTGCAGAGGCTGCAGGAGCAGTACAGGTGGCCTACATTACACAAGTGAATGAAGATTGTGTGGGCGA
CGGGGTCTGCGTGACCTTCTGGAGAAGCAGCCCTTTGGATGTTGTAGATAGGAACAACAGAATCGCAATC
TTATTAAAAACAGAAGGAATTAATTTGGTTACGGCCGTGCTCACTAACCCAGTTACTGCACAGATGCAAA
TCAAAGAAGATAGGTTCTGGACATGTGCCTATCGTTTGTATTATGCTCTAAAAGAGGAAAAGGTCTTCCT
TGGAGGTGGTGCAGTTGAATTTTTGTGTCTTAGCTGTCTTCATATTCTTGCAGAGCAATCTCTGAAAAAA
GAAAACCATGCCTGCTCAGGGTGGCTGCATAATACTTCCTCTTGGCTGGCTTCATCTCTGGCAATATACA
GACCAACTGTGCTTAAATTCCTGGCAAATGGATGGCAGAAATACCTTTCAACTCTCCTATATAACACTGC
CAATTACTCATCAGAATTTGAAGCCAGCACATACATTCAACATCATCTGCAAAATGCCACAGACTCTGGC
TCTCCTTCATCTTACATCTTGAATGAATATAGTAAACTAAATAGTAGAATTTTTAATTCAGACATTTCAA
ATAAACTGGAGCAGATTCCGAGAGTTTATGACGTTGTTACACCAAAGATTGAGGCGTGGCGCCGAGCATT
GGATTTAGTATTGTTAGTACTTCAGACAGACAGTGAAATAATTACTGGACATGGACACACACAGATAAAT
TCACAGGAATTAACGGGCTTTCTATTTTTGTAG

Translation (710 aa):
MVMACRVVNKRRHMGLQQLSSFAETGRTFLGPLKSSKFIIDEECHESVLISSTVRLLESLDLTSAVGQLL
NEAVQAQNNTYRTGISTLLFLVGAWSSAVEECLHLGVPISIIVSVMSEGLNFCSEEVVSLHVPVHNIFDC
MDSTKTFSQLETFSVSLCPFLQVPSDTDLIEELHGLKDVASQTLTISNLSGRPLKSYELFKPQTKVEADN
NTSRTLKNSLLADTCCRQSILIHSRHFNRTDNTEGVSKPDGFQEHVTATHKTYRCNDLVELAVGLSHGDH
SSMKLVEEAVQLQYQNACVQQGNCTKPFMFDISRIFTCCLPGLPETSSCVCPGYITVVSVSNNPVIKELQ
NQPVRIVLIEGDLTENYRHLGFNKSANIKTVLDSMRLQEDSSEELWANHVLQVLIQFKVNLVLVQGNVSE
RLIEKCINSKRLVIGSVNGSVMQAFAEAAGAVQVAYITQVNEDCVGDGVCVTFWRSSPLDVVDRNNRIAI
LLKTEGINLVTAVLTNPVTAQMQIKEDRFWTCAYRLYYALKEEKVFLGGGAVEFLCLSCLHILAEQSLKK
ENHACSGWLHNTSSWLASSLAIYRPTVLKFLANGWQKYLSTLLYNTANYSSEFEASTYIQHHLQNATDSG
SPSSYILNEYSKLNSRIFNSDISNKLEQIPRVYDVVTPKIEAWRRALDLVLLVLQTDSEIITGHGHTQIN
SQELTGFLFL


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
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