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Report for CCDS55255.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
55255.1 |
Public |
Homo sapiens |
8 |
RBIS |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:401466](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:55255.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:401466](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 8 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public Note for CCDS 55255.1 |
The coding region was updated to include a 6-nt insertion found in the GRCh38 reference genome assembly and in aligning transcripts, resulting in two extra amino acids in the protein C-terminus. |
Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62
Review status: Reviewed (by RefSeq, Havana and CCDS collaboration) Sequence IDs included in CCDS 55255.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000612809.4 |
ENSP00000481745.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000612809.4](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000481745.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000612809](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000481745](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000615697.4 |
ENSP00000482944.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000615697.4](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000482944.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000615697](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000482944](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000612977.4 |
ENSP00000484101.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000612977.4](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000484101.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000612977](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000484101](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000619594.5 |
ENSP00000484492.1 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000619594.5](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000484492.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000619594](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000484492](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000611854.4 |
ENSP00000484811.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000611854.4](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000484811.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000611854](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000484811](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001099670.3 |
NP_001093140.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001099670.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001093140.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001099670](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001093140](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001093140.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001099671.3 |
NP_001093141.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001099671.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001093141.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001099671](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001093141](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001093141.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001099672.3 |
NP_001093142.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001099672.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001093142.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001099672](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001093142](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001093142.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001099673.3 |
NP_001093143.1 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001099673.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001093143.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001099673](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001093143](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001093143.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 55255.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (303 nt): ATGGCCAAGAACAAATTAAGAGGGCCGAAGTCCAGGAATGTATTTCACATAGCCAGCCAAAAAAACTTTA AGGCTAAAAACAAAGCAAAACCAGTTACCACTAATCTTAAGAAGATAAACATTATGAATGAGGAAAAAGT TAACAGAGTAAATAAAGCTTTTGTAAATGTACAAAAGGAACTTGCACATTTCGCAAAAAGCATTTCACTT GAACCTCTGCAGAAAGAACTGATTCCTCAGCAGCGTCATGAAAGCAAACCAGTTAATGTTGATGAAGCTA CAAGATTAATGGCTCTGTTGTAA
Translation (100 aa): MAKNKLRGPKSRNVFHIASQKNFKAKNKAKPVTTNLKKINIMNEEKVNRVNKAFVNVQKELAHFAKSISL EPLQKELIPQQRHESKPVNVDEATRLMALL
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