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Report for CCDS47048.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47048.1 Public Homo sapiens 4 BEND4 24 110 108 CCDS HistoryNCBI Gene:389206Re-query CCDS DB by CCDS ID:47048.1Re-query CCDS DB by GeneID:389206See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47048.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000502486.6 ENSP00000421169.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000502486.6Link to Ensembl Protein Viewer:ENSP00000421169.1Re-query CCDS DB by Nucleotide ID:ENST00000502486Re-query CCDS DB by Protein ID:ENSP00000421169
Original member Current member NCBI NM_207406.4 NP_997289.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_207406.4Link to Protein Sequence:NP_997289.2Re-query CCDS DB by Nucleotide ID:NM_207406Re-query CCDS DB by Protein ID:NP_997289Link to BLAST:NP_997289.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_997289.2 534 Q6ZU67-1 534 100% 0 0

Chromosomal Locations for CCDS 47048.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 42117518 42117735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 42120054 42120294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 42125583 42125674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 42143428 42143994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 42151657 42152143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1605 nt):
ATGGAGGAAGAGATGCAGCCGGCAGAGGAGGGGCCCAGCGTCCCCAAAATCTACAAGCAGCGCAGCCCCT
ACAGCGTCCTCAAGACGTTCCCCAGCAAGAGACCGGCGCTGGCCAAGCGCTACGAGCGACCCACCCTGGT
GGAGCTGCCGCACGTGCGGGCGCCCCCGCCGCCCCCGCCGCCCTTCGCGCCGCACGCCGCCGTCTCCATC
AGCAGCAGCGAGCCGCCGCCGCAGCAGTTCCAGGCGCAGAGCTCCTACCCCCCCGGGCCCGGCCGGGCCG
CCGCCGCCGCTTCGTCGTCGTCGCCGTCCTGCACGCCCGCCACATCCCAGGGCCACTTGAGGACTCCGGC
GCAGCCGCCGCCCGCGTCCCCCGCCGCCTCCTCGTCGTCTTCGTTCGCCGCTGTCGTCAGGTATGGCCCA
GGCGCGGCGGCGGCCGCCGGCACCGGCGGCACGGGTAGCGACAGCGCCAGCCTGGAGCTCAGCGCAGAGA
GTCGAATGATCTTGGATGCCTTTGCCCAGCAGTGCAGTCGAGTTCTTAGCCTCTTAAATTGTGGAGGAAA
ACTCCTGGACTCCAACCATTCTCAGTCCATGATTTCTTGCGTAAAGCAGGAAGGCTCAAGTTACAACGAA
AGACAGGAGCACTGTCACATTGGGAAAGGGGTCCACAGTCAGACCTCAGACAATGTAGACATAGAGATGC
AGTATATGCAAAGGAAACAACAAACTTCTGCCTTTTTGAGGGTTTTCACTGACTCTCTACAAAATTACCT
GCTCTCGGGAAGCTTTCCAACTCCAAACCCCTCGTCAGCCAGTGAATATGGCCATCTGGCCGACGTGGAT
CCTCTGTCAACCTCTCCTGTGCATACATTAGGTGGCTGGACTTCCCCAGCAACGTCCGAATCCCATGGCC
ACCCATCTTCATCTACACTGCCAGAAGAGGAGGAGGAGGAGGACGAGGAAGGCTATTGTCCTCGATGCCA
AGAGCTGGAGCAGGAGGTTATTTCACTGCAACAAGAAAATGAAGAGCTCAGAAGGAAATTAGAGAGCATC
CCAGTGCCCTGCCAGACCGTTTTAGATTACTTGAAGATGGTTCTGCAGCACCACAACCAACTCCTGATAC
CACAGCCAGCTGACCAGCCGACAGAGGGAAGCAAGCAGCTGTTGAACAACTATCCTGTCTACATAACGAG
CAAACAGTGGGATGAGGCTGTAAATTCTTCAAAGAAAGATGGGAGACGGCTCCTTCGATACCTCATCAGA
TTTGTTTTCACAACCGATGAGCTTAAGTACTCATGCGGCCTTGGGAAAAGGAAAAGGTCAGTGCAGTCAG
GAGAGACAGGTCCCGAAAGACGCCCTCTGGATCCAGTTAAAGTAACATGCCTCCGAGAATTCATTAGGAT
GCATTGTACCTCCAACCCCGATTGGTGGATGCCCTCGGAAGAGCAGATAAACAAAGTGTTCAGCGACGCT
GTCGGTCACGCCCGACAGGGGCGGGCGGTGGGGACTTTCCTGCACAACGGTGGCTCATTTTATGAAGGGA
TCGATCACCAGGCTTCTCAGGATGAAGTCTTCAATAAAAGTTCCCAGGATGGATCTGGGGATTAG

Translation (534 aa):
MEEEMQPAEEGPSVPKIYKQRSPYSVLKTFPSKRPALAKRYERPTLVELPHVRAPPPPPPPFAPHAAVSI
SSSEPPPQQFQAQSSYPPGPGRAAAAASSSSPSCTPATSQGHLRTPAQPPPASPAASSSSSFAAVVRYGP
GAAAAAGTGGTGSDSASLELSAESRMILDAFAQQCSRVLSLLNCGGKLLDSNHSQSMISCVKQEGSSYNE
RQEHCHIGKGVHSQTSDNVDIEMQYMQRKQQTSAFLRVFTDSLQNYLLSGSFPTPNPSSASEYGHLADVD
PLSTSPVHTLGGWTSPATSESHGHPSSSTLPEEEEEEDEEGYCPRCQELEQEVISLQQENEELRRKLESI
PVPCQTVLDYLKMVLQHHNQLLIPQPADQPTEGSKQLLNNYPVYITSKQWDEAVNSSKKDGRRLLRYLIR
FVFTTDELKYSCGLGKRKRSVQSGETGPERRPLDPVKVTCLREFIRMHCTSNPDWWMPSEEQINKVFSDA
VGHARQGRAVGTFLHNGGSFYEGIDHQASQDEVFNKSSQDGSGD


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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