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Report for CCDS2401.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2401.1 Public Homo sapiens 2 TMEM169 24 110 108 CCDS HistoryNCBI Gene:92691Re-query CCDS DB by CCDS ID:2401.1Re-query CCDS DB by GeneID:92691See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2401.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000295658.8 ENSP00000295658.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000295658.8Link to Ensembl Protein Viewer:ENSP00000295658.4Re-query CCDS DB by Nucleotide ID:ENST00000295658Re-query CCDS DB by Protein ID:ENSP00000295658
Original member Current member EBI ENST00000406027.2 ENSP00000384100.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000406027.2Link to Ensembl Protein Viewer:ENSP00000384100.2Re-query CCDS DB by Nucleotide ID:ENST00000406027Re-query CCDS DB by Protein ID:ENSP00000384100
Original member Current member EBI ENST00000437356.7 ENSP00000401305.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000437356.7Link to Ensembl Protein Viewer:ENSP00000401305.2Re-query CCDS DB by Nucleotide ID:ENST00000437356Re-query CCDS DB by Protein ID:ENSP00000401305
Original member Current member EBI ENST00000454545.5 ENSP00000412524.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000454545.5Link to Ensembl Protein Viewer:ENSP00000412524.1Re-query CCDS DB by Nucleotide ID:ENST00000454545Re-query CCDS DB by Protein ID:ENSP00000412524
Original member Current member NCBI NM_001142310.2 NP_001135782.1 Accepted alive Link to Nucleotide Sequence:NM_001142310.2Link to Protein Sequence:NP_001135782.1Re-query CCDS DB by Nucleotide ID:NM_001142310Re-query CCDS DB by Protein ID:NP_001135782Link to BLAST:NP_001135782.1
Original member Current member NCBI NM_001142311.2 NP_001135783.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001142311.2Link to Protein Sequence:NP_001135783.1Re-query CCDS DB by Nucleotide ID:NM_001142311Re-query CCDS DB by Protein ID:NP_001135783Link to BLAST:NP_001135783.1
Original member Current member NCBI NM_001142312.2 NP_001135784.1 Accepted alive Link to Nucleotide Sequence:NM_001142312.2Link to Protein Sequence:NP_001135784.1Re-query CCDS DB by Nucleotide ID:NM_001142312Re-query CCDS DB by Protein ID:NP_001135784Link to BLAST:NP_001135784.1
Original member Current member NCBI NM_138390.4 NP_612399.1 Accepted alive Link to Nucleotide Sequence:NM_138390.4Link to Protein Sequence:NP_612399.1Re-query CCDS DB by Nucleotide ID:NM_138390Re-query CCDS DB by Protein ID:NP_612399Link to BLAST:NP_612399.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001135782.1 297 Q96HH4 297 100% 0 0
NP_001135783.1 297 Q96HH4 297 100% 0 0
NP_001135784.1 297 Q96HH4 297 100% 0 0
NP_612399.1 297 Q96HH4 297 100% 0 0

Chromosomal Locations for CCDS 2401.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 216095964 216096234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 216099920 216100542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (894 nt):
ATGGAAGAGCCAACAGCAGTAGAAGGCCAGGTCCAGCTTCCAAGCCCCCACCAGGGCTCTCTCAGGAAGG
CTGTGGCTGCTGCCCTGGCGCTGGATGGGGAATCCACAATGGGGCACAGGAAAAAGAAGAGGAAAGAGTC
ACGCCCAGAATCCATCATCATCTACCGCTCAGACAATGAGAAAACAGATGAGGAGCCCGGAGAATCAGAA
GGTGGAGATCAGCCTAAAGAGGAGGAGGGAGATGATTTCCTAGACTATCCTGTGGATGATGATATGTGGA
ACCTGCCTCTGGACAGCCGCTACGTCACCTTAACTGGGACCATCACACGAGGGAAGAAAAAGGGTCAGAT
GGTGGACATCCATGTCACATTGACAGAGAAAGAGCTGCAGGAACTGACCAAACCTAAAGAGTCATCAAGG
GAAACGACGCCTGAAGGAAGAATGGCCTGCCAGATGGGAGCTGACCGTGGGCCCCATGTGGTCCTCTGGA
CGCTGATCTGCCTGCCTGTGGTTTTCATCCTTTCTTTTGTTGTCTCTTTCTACTACGGCACTATCACCTG
GTACAACATCTTCCTCGTGTATAATGAGGAAAGGACCTTCTGGCACAAGATCTCGTATTGCCCTTGCCTC
GTTCTCTTCTATCCAGTGCTCATCATGGCCATGGCTTCTTCCCTCGGCCTCTACGCTGCTGTGGTCCAGC
TCTCGTGGTCCTGGGAAGCATGGTGGCAAGCTGCCCGGGACATGGAGAAAGGCTTCTGTGGCTGGCTCTG
CAGCAAGCTGGGTCTGGAGGACTGTTCTCCCTACAGCATTGTGGAGTTGCTTGAATCCGACAATATCTCA
AGCACTCTCTCCAACAAGGACCCCATCCAAGAAGTAGAAACCTCCACGGTCTAA

Translation (297 aa):
MEEPTAVEGQVQLPSPHQGSLRKAVAAALALDGESTMGHRKKKRKESRPESIIIYRSDNEKTDEEPGESE
GGDQPKEEEGDDFLDYPVDDDMWNLPLDSRYVTLTGTITRGKKKGQMVDIHVTLTEKELQELTKPKESSR
ETTPEGRMACQMGADRGPHVVLWTLICLPVVFILSFVVSFYYGTITWYNIFLVYNEERTFWHKISYCPCL
VLFYPVLIMAMASSLGLYAAVVQLSWSWEAWWQAARDMEKGFCGWLCSKLGLEDCSPYSIVELLESDNIS
STLSNKDPIQEVETSTV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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