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Report for CCDS32.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
32.1 Public Homo sapiens 1 SSU72 24 110 108 CCDS HistoryNCBI Gene:29101Re-query CCDS DB by CCDS ID:32.1Re-query CCDS DB by GeneID:29101See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 32.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000291386.4 ENSP00000291386.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000291386.4Link to Ensembl Protein Viewer:ENSP00000291386.3Re-query CCDS DB by Nucleotide ID:ENST00000291386Re-query CCDS DB by Protein ID:ENSP00000291386
Original member Current member NCBI NM_014188.3 NP_054907.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014188.3Link to Protein Sequence:NP_054907.1Re-query CCDS DB by Nucleotide ID:NM_014188Re-query CCDS DB by Protein ID:NP_054907Link to BLAST:NP_054907.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_054907.1 194 Q9NP77-1 194 100% 0 0

Chromosomal Locations for CCDS 32.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 1542066 1542167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1543869 1543987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1544863 1545002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1564773 1564916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1574478 1574557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (585 nt):
ATGCCGTCGTCCCCGCTGCGGGTGGCGGTGGTGTGCTCGAGCAACCAGAACCGGAGCATGGAGGCGCACA
ACATCCTCAGCAAACGGGGATTCAGCGTCCGATCCTTTGGAACAGGGACTCACGTGAAGCTTCCAGGACC
AGCTCCCGACAAGCCCAATGTTTATGATTTCAAAACCACATATGACCAGATGTACAATGATCTTCTTAGG
AAAGACAAAGAACTCTATACACAGAATGGGATTTTACATATGCTGGACAGAAATAAGAGAATCAAGCCCC
GGCCAGAAAGATTCCAGAACTGCAAAGACCTGTTTGATCTGATCCTCACTTGCGAAGAGAGAGTGTATGA
CCAGGTGGTGGAAGATCTGAATTCCAGAGAACAGGAGACCTGCCAGCCTGTGCACGTGGTCAATGTGGAC
ATCCAGGACAACCACGAGGAGGCCACCCTGGGGGCGTTTCTCATCTGTGAGCTCTGCCAGTGTATCCAGC
ACACGGAAGACATGGAGAACGAGATCGACGAGCTGCTGCAGGAGTTCGAGGAGAAGAGTGGCCGCACCTT
TCTGCACACCGTCTGCTTCTACTGA

Translation (194 aa):
MPSSPLRVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYNDLLR
KDKELYTQNGILHMLDRNKRIKPRPERFQNCKDLFDLILTCEERVYDQVVEDLNSREQETCQPVHVVNVD
IQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSGRTFLHTVCFY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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