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Report for CCDS3040.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3040.1 Public Homo sapiens 3 C3orf22 24 110 108 CCDS HistoryNCBI Gene:152065Re-query CCDS DB by CCDS ID:3040.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3040.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000318225.3 ENSP00000316644.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000318225.3Link to Ensembl Protein Viewer:ENSP00000316644.2Re-query CCDS DB by Nucleotide ID:ENST00000318225Re-query CCDS DB by Protein ID:ENSP00000316644
Original member Current member NCBI NM_152533.3 NP_689746.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152533.3Link to Protein Sequence:NP_689746.1Re-query CCDS DB by Nucleotide ID:NM_152533Re-query CCDS DB by Protein ID:NP_689746Link to BLAST:NP_689746.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689746.1 141 Q8N5N4-1 141 100% 0 0

Chromosomal Locations for CCDS 3040.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 126549868 126550078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 126551997 126552122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 126553302 126553390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (426 nt):
ATGGACTCCAGTGCCTGCAAGAAGTCTCACCAGAGTAAGAAGTGGAGGATCCAGGCCCAGGAGAATTTTG
CCAAGAAGTTTCCGTACAGGTTGTCGTGGCTGACAGAGCCCGACCCTGAGCCCCTGCAGCCCTGGGAGGT
CACAAACGACTCGAACACGGTGCAGCTGCCCCTGCAGAAGAGGTTGGTGCCAACGAGGTCCATCCCAGTC
CGAGGGCTCGGGGCTCCAGATTTTACATCACCGTCTGGCTCCTGCCCGGCACCACTACCAGCACCATCAC
CACCTCCACTGTGCAACCTTTGGGAACTCAAGTTGCTGAGTCGCCGCTTCCCCAGACAACTCGCCTTCCT
GCTGTCCACCCGGCACACTGAGGCTGCCTGCCCCCAGACCAGCAAGGCGGCAGGGCTGTCCAGGGGCCTC
TCCTAG

Translation (141 aa):
MDSSACKKSHQSKKWRIQAQENFAKKFPYRLSWLTEPDPEPLQPWEVTNDSNTVQLPLQKRLVPTRSIPV
RGLGAPDFTSPSGSCPAPLPAPSPPPLCNLWELKLLSRRFPRQLAFLLSTRHTEAACPQTSKAAGLSRGL
S


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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