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Report for CCDS36226.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36226.1 Reviewed, update pending Mus musculus 11 Hic1 23 108 98 CCDS HistoryNCBI Gene:15248Re-query CCDS DB by CCDS ID:36226.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 36226.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055619.4 ENSMUSP00000053483.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055619.4Link to Ensembl Protein Viewer:ENSMUSP00000053483.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000055619Re-query CCDS DB by Protein ID:ENSMUSP00000053483
Original member NCBI NM_010430.2 NP_034560.2 Updated not alive Link to Nucleotide Sequence:NM_010430.2Link to Protein Sequence:NP_034560.2Re-query CCDS DB by Nucleotide ID:NM_010430Re-query CCDS DB by Protein ID:NP_034560
Current member NCBI NM_010430.3 NP_034560.3 Pending alive Link to Nucleotide Sequence:NM_010430.3Link to Protein Sequence:NP_034560.3Re-query CCDS DB by Nucleotide ID:NM_010430Re-query CCDS DB by Protein ID:NP_034560Link to BLAST:NP_034560.3

Chromosomal Locations for CCDS 36226.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 75165380 75167544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75169003 75169519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2682 nt):
ATGATTACAAGAATGCGCCACCATCCCTGGCTTAAGAGTTCCTCATTTGAAGACAGAACCTTCCCCTCCC
CCCCCCCGAATTGGCGCGATATAACATATAAATATGTACTCGGGAGCACTCAGCACAAAACCCCCAGGTT
TATGGGACTCCCAGGTCCGATATCTGAGTCTCCAGGTGGGCACATCTGGAAGCGCGCGAACCTGCAAGAT
CTGCTCAGCTCCGCATCTGCAAGCCTCTTGGCCCAGGTGTGCGCCAGAGGTCGCAGCCCAGCCGCACACA
GTCCCCGCGTGGCCGCGAGGTGGCGCCATGGCCGCGGCAGCGTCTGCCGGTTCGGGCCGCTCCAGATAAG
AGTGTGCGGAAAGCGCGGAGGGGCTGAGACGCGACCAGGACGCGGGGAGGACGGACCGGCAAGACAGACC
GACCGGGGGCCCGGCGGGCGGAGGGCAGCGCACTGCAGCCACGTCCCCCCCTGGATCCGCCGGCAGCCGG
GCCCGGGGCTTCCGACATGCCCCCCAGGAGAGTGTGCTGGGCAGACGATGCTGGACACGATGGAGGCGCC
TGGCCATTCGAGGCAGCTACTGCTGCAGCTCAACAATCAGCGCACCAAGGGCTTCTTGTGCGACGTGATC
ATCGTGGTGCAGAATGCCCTCTTCCGCGCGCACAAGAACGTGCTGGCGGCCAGCAGCGCCTACCTCAAGT
CCCTGGTGGTGCATGACAACCTGCTAAACCTGGACCATGACATGGTGAGCCCGGCCGTGTTCCGCCTGGT
GCTGGACTTCATCTACACCGGCCGCCTGACTGACAGTGTTGAGGCCGCAGCAGCAGCAGCGGTGGCCCCG
GGCGCGGAGCCGAGCCTGGGCGCTGTGCTGGCTGCTGCCAGCTACCTGCAGATCCCTGACCTCGTGGCTC
TGTGCAAGAAGCGCCTCAAACGCCACGGCAAGTACTGCCACCTGCGGGGAGGAGGCAGCGGCGGCGGCGG
CTACGCTCCTTACGGGCGGCCCGGCCGGGGCTTGAGGGCTGCCACGCCCGTCATCCAGGCTTGCTACTCG
TCCCCGGCCGGGCCACCGCCGCCGCCTGCCGCCGAGCCGCCGTCGGGCCCCGATGCAGCCGTCAACACCC
ACTGCGCTGAGCTATATGCTTCAGGCCCGGGCCCAGCAGCCTCACTCTGCGCCCCGGAGCGTCGCTGCTC
CCCGCTTTGCGGCCTGGATCTGTCCAAGAAGAGCCCGCCAGGTTCCTCGGTCCCCGAGCGACCGCTTAGT
GAGCGCGAACTGCCTCCACGCCCGGATAGCCCTCCCGGTGCGGGGCCCGCAGTCTACAAGGAGCCATCAC
TCGCCCTGCCCCCGCTGCCGCCTTTGCCCTTCCAAAAGCTGGAGGAGGCCGTACCGACTCCAGACCCGTT
TCGAGGAAGCGGTGGCAGTCCGGGACCCGAGCCCCCCGGCCGCCCCGACGGCTCCAGCCTCCTCTACCGC
TGGATGAAGCACGAGCCAGGCCTGGGTAGTTATGGCGATGAACTGGTCCGGGATCGAGGCTCCCCGGGTG
AGCGCCTGGAGGAGCGCGGTGGGGATCCTGCCGCCTCACCCGGGGGCCCCCCGCTGGGCCTGGTACCCCC
GCCACGCTACCCCGGGAGCCTGGACGGGCCAGGCACAGGAGCAGACGGCGACGACTATAAGAGCAGCAGC
GAGGAGACCGGTAGCAGCGAAGACCCCAGCCCACCCGGCGGCCACCTGGAGGGCTACCCATGCCCGCACT
TGGCTTATGGTGAGCCTGAGAGCTTTGGTGACAACCTGTACGTGTGCATCCCATGTGGCAAAGGCTTCCC
CAGCTCGGAACAGCTGAATGCACACGTGGAGGCTCACGTAGAGGAAGAAGAGGCGTTATATGGCAGGGCA
GAGGCTGCTGAGGTGGCTGCTGGGGCCGCCGGCCTTGGGCCCCCCTTTGGTGGCGGTGGGGACAAGGTCA
CTGGGGCGCCGGGCGGACTAGGAGAGCTGCTGCGGCCATACCGCTGCGCGTCCTGCGACAAGAGCTACAA
GGACCCGGCCACGCTGAGGCAGCACGAGAAGACACACTGGCTGACAAGGCCCTATCCGTGTACCATCTGC
GGAAAGAAGTTCACGCAACGCGGAACCATGACACGCCATATGCGCAGCCACTTGGGCCTGAAGCCCTTTG
CGTGCGACGCGTGCGGCATGCGCTTCACCCGCCAGTATCGCCTCACGGAGCACATGCGCATCCACTCTGG
AGAGAAGCCCTACGAGTGCCAGGTGTGCGGTGGCAAGTTTGCTCAACAGCGCAACCTCATCAGCCATATG
AAGATGCACGCTGTAGGTGGCGCGGCCGGCGCGGCCGGGGCGCTGGCTGGCCTGGGGGGACTACCTGGCG
TCCCTGGCCCTGACGGCAAGGGCAAGCTCGACTTCCCTGAGGGTGTCTTTGCTGTGGCCCGCCTCACAGC
TGAACAGCTGAGTCTGAAGCAGCAGGACAAGGCAGCTGCTGCCGAGCTGCTGGCGCAGACCACGCACTTC
CTGCACGACCCCAAGGTGGCGCTGGAGAGCCTCTACCCGCTGGCTAAATTCACTGCTGAGCTAGGACTCA
GCCCAGACAAGGCGGCAGAGGTGCTGAGCCAGGGTGCGCACTTGGCCGCAGGACCGGACAGCCGAACCAT
CGACCGTTTCTCTCCCACCTAG

Translation (893 aa):
MITRMRHHPWLKSSSFEDRTFPSPPPNWRDITYKYVLGSTQHKTPRFMGLPGPISESPGGHIWKRANLQD
LLSSASASLLAQVCARGRSPAAHSPRVAARWRHGRGSVCRFGPLQIRVCGKRGGAETRPGRGEDGPARQT
DRGPGGRRAAHCSHVPPWIRRQPGPGLPTCPPGECAGQTMLDTMEAPGHSRQLLLQLNNQRTKGFLCDVI
IVVQNALFRAHKNVLAASSAYLKSLVVHDNLLNLDHDMVSPAVFRLVLDFIYTGRLTDSVEAAAAAAVAP
GAEPSLGAVLAAASYLQIPDLVALCKKRLKRHGKYCHLRGGGSGGGGYAPYGRPGRGLRAATPVIQACYS
SPAGPPPPPAAEPPSGPDAAVNTHCAELYASGPGPAASLCAPERRCSPLCGLDLSKKSPPGSSVPERPLS
ERELPPRPDSPPGAGPAVYKEPSLALPPLPPLPFQKLEEAVPTPDPFRGSGGSPGPEPPGRPDGSSLLYR
WMKHEPGLGSYGDELVRDRGSPGERLEERGGDPAASPGGPPLGLVPPPRYPGSLDGPGTGADGDDYKSSS
EETGSSEDPSPPGGHLEGYPCPHLAYGEPESFGDNLYVCIPCGKGFPSSEQLNAHVEAHVEEEEALYGRA
EAAEVAAGAAGLGPPFGGGGDKVTGAPGGLGELLRPYRCASCDKSYKDPATLRQHEKTHWLTRPYPCTIC
GKKFTQRGTMTRHMRSHLGLKPFACDACGMRFTRQYRLTEHMRIHSGEKPYECQVCGGKFAQQRNLISHM
KMHAVGGAAGAAGALAGLGGLPGVPGPDGKGKLDFPEGVFAVARLTAEQLSLKQQDKAAAAELLAQTTHF
LHDPKVALESLYPLAKFTAELGLSPDKAAEVLSQGAHLAAGPDSRTIDRFSPT


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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