NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS4280.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4280.1 Public Homo sapiens 5 SH3RF2 24 110 108 CCDS HistoryNCBI Gene:153769Re-query CCDS DB by CCDS ID:4280.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4280.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000359120.9 ENSP00000352028.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000359120.9Link to Ensembl Protein Viewer:ENSP00000352028.4Re-query CCDS DB by Nucleotide ID:ENST00000359120Re-query CCDS DB by Protein ID:ENSP00000352028
Original member Current member EBI ENST00000511217.1 ENSP00000424497.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000511217.1Link to Ensembl Protein Viewer:ENSP00000424497.1Re-query CCDS DB by Nucleotide ID:ENST00000511217Re-query CCDS DB by Protein ID:ENSP00000424497
Original member Current member NCBI NM_152550.4 NP_689763.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152550.4Link to Protein Sequence:NP_689763.4Re-query CCDS DB by Nucleotide ID:NM_152550Re-query CCDS DB by Protein ID:NP_689763Link to BLAST:NP_689763.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689763.4 729 Q8TEC5-1 729 100% 0 0

Chromosomal Locations for CCDS 4280.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 145937929 145938306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146000058 146000327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146004058 146004153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146013747 146014061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146047772 146047863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146049075 146049245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146055981 146056213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146059866 146060224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146062426 146062701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2190 nt):
ATGGATGATTTGACGTTACTTGATCTTCTGGAGTGCCCTGTGTGCTTTGAGAAGCTCGATGTCACAGCCA
AAGTCCTCCCTTGCCAGCACACCTTCTGCAAACCATGTCTACAGAGGGTTTTCAAGGCCCACAAAGAGCT
GCGGTGCCCCGAATGCAGGACGCCTGTGTTTTCCAACATTGAGGCGCTGCCGGCCAACCTGCTGCTCGTG
CGCCTTCTGGATGGAGTGCGCTCAGGGCAGAGCTCCGGGAGAGGGGGCTCCTTCCGCAGGCCTGGCACGA
TGACCTTGCAGGATGGCAGGAAAAGCAGGACCAACCCCAGACGTCTGCAGGCCAGTCCTTTCCGGCTAGT
GCCTAATGTCAGAATCCACATGGATGGGGTGCCTCGAGCAAAGGCCTTATGCAACTACAGAGGGCAGAAT
CCCGGTGACCTAAGGTTTAATAAGGGAGATATCATCCTTCTCCGGAGACAGCTTGATGAGAATTGGTACC
AGGGGGAAATCAATGGCATCAGCGGGAACTTCCCAGCCAGCTCCGTGGAAGTCATCAAGCAGCTGCCCCA
GCCGCCCCCGCTCTGCAGGGCCCTCTACAACTTCGACCTACGAGGCAAGGACAAGAGTGAGAACCAGGAT
TGCCTGACCTTCCTCAAGGACGATATCATCACTGTGATCAGCCGAGTGGATGAGAACTGGGCAGAAGGCA
AGTTAGGAGATAAAGTAGGCATCTTCCCTATCTTGTTTGTAGAGCCAAACCTCACCGCAAGACACCTTTT
AGAGAAGAACAAAGGTCGCCAGTCATCCCGCACAAAAAACCTGTCCCTGGTGTCCTCGTCCTCCAGAGGC
AACACGTCTACCCTCCGTAGGGGCCCAGGGTCCAGGAGGAAGGTGCCTGGGCAGTTTTCCATCACAACAG
CCTTGAACACTCTCAACCGGATGGTCCATTCTCCTTCAGGGCGCCATATGGTAGAGATCAGCACCCCAGT
GCTCATCAGCTCCAGCAACCCCTCTGTGATCACCCAGCCCATGGAGAAAGCAGACGTTCCTTCCAGCTGT
GTGGGACAGGTCAGCACTTATCACCCCGCACCTGTCTCTCCAGGACATTCCACAGCCGTGGTCAGTCTGC
CTGGCTCCCAGCAACACCTCTCAGCGAACATGTTTGTAGCCCTGCACTCCTACTCAGCCCATGGACCCGA
TGAGCTGGACCTGCAAAAGGGAGAAGGCGTCAGGGTCCTGGGGAAGTGCCAGGACGGCTGGCTCAGGGGC
GTCTCCTTGGTCACCGGGCGAGTCGGCATCTTCCCAAACAATTACGTCATCCCCATTTTCAGAAAGACCT
CTAGTTTTCCAGACTCCCGGAGCCCTGGTCTCTACACCACATGGACGTTATCCACCTCCTCTGTGTCCTC
CCAAGGCAGCATTTCAGAAGGTGATCCACGGCAAAGCCGTCCCTTCAAATCCGTCTTTGTGCCCACTGCC
ATAGTCAACCCCGTGAGAAGCACAGCCGGCCCTGGGACTTTAGGACAAGGGTCTCTTCGGAAAGGGCGGA
GCAGCATGAGAAAGAATGGATCCCTGCAGAGACCCCTCCAGTCCGGGATCCCCACTCTCGTGGTAGGCTC
CCTCAGACGCAGCCCCACCATGGTCCTTCGGCCTCAGCAGTTCCAATTCTACCAGCCACAGGGGATCCCC
TCCTCCCCCTCAGCCGTGGTGGTGGAGATGGGGTCCAAGCCTGCCCTCACGGGGGAGCCCGCCCTCACGT
GCATCAGCAGGGGCAGTGAGGCCTGGATCCACTCCGCGGCCAGCTCCCTCATTATGGAAGACAAAGAAAT
CCCCATCAAGAGTGAGCCTCTGCCAAAACCGCCCGCATCTGCCCCACCATCCATCCTGGTGAAACCAGAA
AACTCAAGAAATGGCATCGAAAAGCAAGTCAAAACCGTGAGATTTCAGAATTACAGCCCTCCTCCCACCA
AACATTACACCTCCCATCCCACCTCCGGAAAGCCTGAACAGCCAGCCACCCTCAAGGCGTCCCAGCCTGA
AGCAGCGTCCTTGGGCCCAGAGATGACCGTCCTATTTGCCCACCGAAGTGGCTGCCACTCCGGACAGCAG
ACAGACCTCCGGAGAAAGTCAGCTCTTGGCAAGGCCACAACCCTGGTGTCCACTGCCTCAGGCACGCAGA
CCGTGTTTCCCAGCAAATGA

Translation (729 aa):
MDDLTLLDLLECPVCFEKLDVTAKVLPCQHTFCKPCLQRVFKAHKELRCPECRTPVFSNIEALPANLLLV
RLLDGVRSGQSSGRGGSFRRPGTMTLQDGRKSRTNPRRLQASPFRLVPNVRIHMDGVPRAKALCNYRGQN
PGDLRFNKGDIILLRRQLDENWYQGEINGISGNFPASSVEVIKQLPQPPPLCRALYNFDLRGKDKSENQD
CLTFLKDDIITVISRVDENWAEGKLGDKVGIFPILFVEPNLTARHLLEKNKGRQSSRTKNLSLVSSSSRG
NTSTLRRGPGSRRKVPGQFSITTALNTLNRMVHSPSGRHMVEISTPVLISSSNPSVITQPMEKADVPSSC
VGQVSTYHPAPVSPGHSTAVVSLPGSQQHLSANMFVALHSYSAHGPDELDLQKGEGVRVLGKCQDGWLRG
VSLVTGRVGIFPNNYVIPIFRKTSSFPDSRSPGLYTTWTLSTSSVSSQGSISEGDPRQSRPFKSVFVPTA
IVNPVRSTAGPGTLGQGSLRKGRSSMRKNGSLQRPLQSGIPTLVVGSLRRSPTMVLRPQQFQFYQPQGIP
SSPSAVVVEMGSKPALTGEPALTCISRGSEAWIHSAASSLIMEDKEIPIKSEPLPKPPASAPPSILVKPE
NSRNGIEKQVKTVRFQNYSPPPTKHYTSHPTSGKPEQPATLKASQPEAASLGPEMTVLFAHRSGCHSGQQ
TDLRRKSALGKATTLVSTASGTQTVFPSK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH