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Report for CCDS20435.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20435.1 Public Mus musculus 6 Hrh1 23 108 98 CCDS HistoryNCBI Gene:15465Re-query CCDS DB by CCDS ID:20435.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20435.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000088987.2 ENSMUSP00000086383.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000088987.2Link to Ensembl Protein Viewer:ENSMUSP00000086383.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000088987Re-query CCDS DB by Protein ID:ENSMUSP00000086383
Original member Current member EBI ENSMUST00000161220.1 ENSMUSP00000124037.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000161220.1Link to Ensembl Protein Viewer:ENSMUSP00000124037.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000161220Re-query CCDS DB by Protein ID:ENSMUSP00000124037
Original member Current member EBI ENSMUST00000160780.1 ENSMUSP00000124320.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000160780.1Link to Ensembl Protein Viewer:ENSMUSP00000124320.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000160780Re-query CCDS DB by Protein ID:ENSMUSP00000124320
Original member Current member EBI ENSMUST00000161650.2 ENSMUSP00000124460.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000161650.2Link to Ensembl Protein Viewer:ENSMUSP00000124460.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000161650Re-query CCDS DB by Protein ID:ENSMUSP00000124460
Original member NCBI NM_001252642.2 NP_001239571.1 Updated not alive Link to Nucleotide Sequence:NM_001252642.2Link to Protein Sequence:NP_001239571.1Re-query CCDS DB by Nucleotide ID:NM_001252642Re-query CCDS DB by Protein ID:NP_001239571
Current member NCBI NM_001252642.3 NP_001239571.1 Accepted alive Link to Nucleotide Sequence:NM_001252642.3Link to Protein Sequence:NP_001239571.1Re-query CCDS DB by Nucleotide ID:NM_001252642Re-query CCDS DB by Protein ID:NP_001239571Link to BLAST:NP_001239571.1
Original member NCBI NM_001252643.2 NP_001239572.1 Updated not alive Link to Nucleotide Sequence:NM_001252643.2Link to Protein Sequence:NP_001239572.1Re-query CCDS DB by Nucleotide ID:NM_001252643Re-query CCDS DB by Protein ID:NP_001239572
Current member NCBI NM_001252643.3 NP_001239572.1 Accepted alive Link to Nucleotide Sequence:NM_001252643.3Link to Protein Sequence:NP_001239572.1Re-query CCDS DB by Nucleotide ID:NM_001252643Re-query CCDS DB by Protein ID:NP_001239572Link to BLAST:NP_001239572.1
Original member NCBI NM_001317124.1 NP_001304053.1 Updated not alive Link to Nucleotide Sequence:NM_001317124.1Link to Protein Sequence:NP_001304053.1Re-query CCDS DB by Nucleotide ID:NM_001317124Re-query CCDS DB by Protein ID:NP_001304053
Current member NCBI NM_001317124.2 NP_001304053.1 Accepted alive Link to Nucleotide Sequence:NM_001317124.2Link to Protein Sequence:NP_001304053.1Re-query CCDS DB by Nucleotide ID:NM_001317124Re-query CCDS DB by Protein ID:NP_001304053Link to BLAST:NP_001304053.1
Original member NCBI NM_001317125.1 NP_001304054.1 Updated not alive Link to Nucleotide Sequence:NM_001317125.1Link to Protein Sequence:NP_001304054.1Re-query CCDS DB by Nucleotide ID:NM_001317125Re-query CCDS DB by Protein ID:NP_001304054
Current member NCBI NM_001317125.2 NP_001304054.1 Accepted alive Link to Nucleotide Sequence:NM_001317125.2Link to Protein Sequence:NP_001304054.1Re-query CCDS DB by Nucleotide ID:NM_001317125Re-query CCDS DB by Protein ID:NP_001304054Link to BLAST:NP_001304054.1
Original member NCBI NM_001317126.1 NP_001304055.1 Updated not alive Link to Nucleotide Sequence:NM_001317126.1Link to Protein Sequence:NP_001304055.1Re-query CCDS DB by Nucleotide ID:NM_001317126Re-query CCDS DB by Protein ID:NP_001304055
Current member NCBI NM_001317126.2 NP_001304055.1 Accepted alive Link to Nucleotide Sequence:NM_001317126.2Link to Protein Sequence:NP_001304055.1Re-query CCDS DB by Nucleotide ID:NM_001317126Re-query CCDS DB by Protein ID:NP_001304055Link to BLAST:NP_001304055.1
Original member NCBI NM_008285.4 NP_032311.2 Updated not alive Link to Nucleotide Sequence:NM_008285.4Link to Protein Sequence:NP_032311.2Re-query CCDS DB by Nucleotide ID:NM_008285Re-query CCDS DB by Protein ID:NP_032311
Current member NCBI NM_008285.5 NP_032311.2 Accepted alive Link to Nucleotide Sequence:NM_008285.5Link to Protein Sequence:NP_032311.2Re-query CCDS DB by Nucleotide ID:NM_008285Re-query CCDS DB by Protein ID:NP_032311Link to BLAST:NP_032311.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001239571.1 488 P70174 488 100% 0 0
NP_001239572.1 488 P70174 488 100% 0 0
NP_001304053.1 488 P70174 488 100% 0 0
NP_001304054.1 488 P70174 488 100% 0 0
NP_001304055.1 488 P70174 488 100% 0 0
NP_032311.2 488 P70174 488 100% 0 0

Chromosomal Locations for CCDS 20435.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 114479760 114481226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1467 nt):
ATGAGCCTTCCCAACACCTCTTCTGCCTCCGAAGACAAGATGTGTGAGGGGAACAGGACAGCCATGGCCA
GCCCTCAGCTGCTGCCCCTGGTGGTGGTTCTAAGTAGTATCTCCCTGGTCACAGTGGGCCTCAACCTGCT
GGTGCTGTATGCAGTGCGCAGTGAGCGCAAGCTACACACCGTGGGCAACCTGTACATTGTCAGCCTGTCG
GTAGCAGACCTGATTGTAGGGGCAGTCGTCATGCCCATGAACATCCTCTATCTTATCATGACCAAGTGGT
CCCTGGGCCGCCCCCTCTGCCTCTTTTGGCTCTCTATGGATTATGTGGCCAGCACGGCATCCATCTTTAG
TGTCTTCATCCTGTGTATTGATCGCTACCGCTCTGTCCAGCAACCCCTCCGGTACCTGAGGTATCGAACC
AAGACCCGTGCTTCAGCTACCATCCTGGGGGCCTGGTTTCTCTCCTTCCTGTGGGTTATACCTATACTTG
GCTGGCATCACTTCACGCCCCTGGCCCCAGAGCTTCGGGAAGATAAGTGTGAGACAGATTTCTACAATGT
CACTTGGTTCAAGATCATGACCGCCATCATCAACTTCTACCTCCCCACTTTGCTCATGCTGTGGTTCTAT
GTGAAGATCTACAAGGCTGTGCGGCGACACTGTCAGCACCGCCAGCTCACCAACGGGTCCCTCCCTACCT
TTTTAGAAATCAAGCTGAGGTCGGAGGATGCCAAAGAGGGTGCCAAGAAACCTGGGAAAGAGTCTCCCTG
GGGGGTCCAGAAGAGGCCGTCAAGAGACCCTACTGGAGGTCTGGATCAGAAGTCAACATCTGAAGACCCC
AAGGTGACCTCTCCGACTGTCTTCAGCCAAGAGGGGGAAAGGGAAACAGTCACACGCCCCTGTTTCCGTC
TTGACGTCATGCAGACACAGCCTGTGCCTGAGGGAGATGCCAGGGGCTCAAAGGCCAATGACCAGACCTT
GAGCCAGCCCAAAATGGATGAGCAGAGCCTGAGTACTTGCCGGCGGATCAGTGAGACATCAGAGGACCAG
ACCTTGGTGGATCGACAGTCCTTCTCCCGGACCACAGACTCAGACACCAGCATAGAGCCAGGGCTGGGCA
AAGTCAAAGCGAGAAGCAGGTCTAACAGTGGCCTGGACTACATCAAAGTCACCTGGAAGAGGCTCCGCTC
ACATTCCAGACAGTATGTGTCCGGGTTGCACTTGAACCGAGAGCGGAAGGCAGCCAAGCAGTTGGGTTGT
ATCATGGCAGCATTCATTCTCTGCTGGATTCCCTATTTCATCTTCTTCATGGTCATTGCCTTCTGCAACA
GCTGCTGCAGCGAACCTGTGCACATGTTCACCATTTGGCTGGGCTACATCAACTCCACGCTGAACCCCCT
CATCTACCCGCTGTGCAACGAGAACTTCAAGAAGACATTCAAAAAAATTCTGCACATTCGTTCCTAA

Translation (488 aa):
MSLPNTSSASEDKMCEGNRTAMASPQLLPLVVVLSSISLVTVGLNLLVLYAVRSERKLHTVGNLYIVSLS
VADLIVGAVVMPMNILYLIMTKWSLGRPLCLFWLSMDYVASTASIFSVFILCIDRYRSVQQPLRYLRYRT
KTRASATILGAWFLSFLWVIPILGWHHFTPLAPELREDKCETDFYNVTWFKIMTAIINFYLPTLLMLWFY
VKIYKAVRRHCQHRQLTNGSLPTFLEIKLRSEDAKEGAKKPGKESPWGVQKRPSRDPTGGLDQKSTSEDP
KVTSPTVFSQEGERETVTRPCFRLDVMQTQPVPEGDARGSKANDQTLSQPKMDEQSLSTCRRISETSEDQ
TLVDRQSFSRTTDSDTSIEPGLGKVKARSRSNSGLDYIKVTWKRLRSHSRQYVSGLHLNRERKAAKQLGC
IMAAFILCWIPYFIFFMVIAFCNSCCSEPVHMFTIWLGYINSTLNPLIYPLCNENFKKTFKKILHIRS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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