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Report for CCDS18049.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18049.1 Public Mus musculus 4 Dnaja1 23 108 98 CCDS HistoryNCBI Gene:15502Re-query CCDS DB by CCDS ID:18049.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18049.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030118.9 ENSMUSP00000030118.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030118.9Link to Ensembl Protein Viewer:ENSMUSP00000030118.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000030118Re-query CCDS DB by Protein ID:ENSMUSP00000030118
Original member Current member EBI ENSMUST00000164233.7 ENSMUSP00000129730.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164233.7Link to Ensembl Protein Viewer:ENSMUSP00000129730.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000164233Re-query CCDS DB by Protein ID:ENSMUSP00000129730
Original member Current member NCBI NM_001164671.2 NP_001158143.1 Accepted alive Link to Nucleotide Sequence:NM_001164671.2Link to Protein Sequence:NP_001158143.1Re-query CCDS DB by Nucleotide ID:NM_001164671Re-query CCDS DB by Protein ID:NP_001158143Link to BLAST:NP_001158143.1
Original member Current member NCBI NM_001164672.2 NP_001158144.1 Accepted alive Link to Nucleotide Sequence:NM_001164672.2Link to Protein Sequence:NP_001158144.1Re-query CCDS DB by Nucleotide ID:NM_001164672Re-query CCDS DB by Protein ID:NP_001158144Link to BLAST:NP_001158144.1
Original member Current member NCBI NM_008298.6 NP_032324.1 Accepted alive Link to Nucleotide Sequence:NM_008298.6Link to Protein Sequence:NP_032324.1Re-query CCDS DB by Nucleotide ID:NM_008298Re-query CCDS DB by Protein ID:NP_032324Link to BLAST:NP_032324.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001158143.1 397 P63037 397 100% 0 0
NP_001158144.1 397 P63037 397 100% 0 0
NP_032324.1 397 P63037 397 100% 0 0

Chromosomal Locations for CCDS 18049.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 40723713 40723844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40723973 40724150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40726105 40726209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40727956 40728183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40730173 40730287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40731684 40731799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40732076 40732176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40732728 40732946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1194 nt):
ATGGTGAAAGAAACCACTTACTACGATGTTTTGGGGGTAAAACCCAATGCCACCCAGGAAGAATTGAAAA
AGGCATATAGAAAATTGGCCTTGAAGTACCACCCTGATAAGAATCCAAATGAAGGGGAAAAGTTTAAACA
GATTTCTCAAGCTTATGAAGTTCTTGCTGATTCCAAAAAAAGGGAACTATATGATAAAGGAGGGGAGCAG
GCGATTAAAGAGGGCGGAGCAGGTGGTGGTTTTGGCTCACCCATGGATATCTTTGATATGTTCTTTGGAG
GAGGAGGAAGAATGCAAAGAGAAAGGAGAGGTAAAAATGTTGTTCATCAGCTCTCAGTGACCTTAGAAGA
CTTATATAATGGTGCAACAAGAAAACTGGCTCTGCAAAAGAATGTGATTTGTGACAAATGTGAAGGCCGA
GGTGGTAAGAAAGGAGCAGTAGAGTGCTGTCCCAACTGCCGGGGGACAGGTATGCAGATAAGGATTCATC
AGATTGGACCAGGAATGGTTCAGCAAATTCAGTCAGTGTGCATGGAGTGCCAGGGTCATGGAGAACGCAT
CAGTCCAAAAGACAGATGTAAAAGCTGCAATGGAAGAAAAATAGTTCGAGAGAAGAAAATTTTAGAAGTT
CATATTGATAAAGGCATGAAAGATGGTCAGAAGATAACATTCCACGGTGAAGGAGACCAAGAACCAGGAC
TGGAGCCAGGAGATATTATCATTGTGTTAGATCAGAAGGACCATGCTGTTTTTACAAGGCGAGGAGAAGA
CCTTTTCATGTGTATGGACATACAGCTGGTTGAAGCATTGTGCGGCTTCCAAAAGCCAATATCTACTCTT
GACAACCGAACCATAGTCATCACCTCTCATCCAGGTCAGATTGTCAAGCATGGGGATATAAAATGTGTGC
TAAATGAAGGTATGCCAATATACCGTCGGCCATATGAAAAGGGACGTCTAATCATTGAGTTTAAGGTAAA
CTTTCCTGAAAATGGCTTTCTCTCTCCTGATAAACTCTCTTTGCTGGAAAAACTCCTTCCTGAAAGGAAG
GAAGTAGAAGAGACTGATGAAATGGATCAGGTAGAACTGGTGGACTTTGATCCAAATCAGGAAAGACGGC
GTCATTATAATGGAGAAGCGTATGAGGATGATGAACATCACCCCAGAGGTGGCGTTCAGTGTCAGACCTC
TTAA

Translation (397 aa):
MVKETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLADSKKRELYDKGGEQ
AIKEGGAGGGFGSPMDIFDMFFGGGGRMQRERRGKNVVHQLSVTLEDLYNGATRKLALQKNVICDKCEGR
GGKKGAVECCPNCRGTGMQIRIHQIGPGMVQQIQSVCMECQGHGERISPKDRCKSCNGRKIVREKKILEV
HIDKGMKDGQKITFHGEGDQEPGLEPGDIIIVLDQKDHAVFTRRGEDLFMCMDIQLVEALCGFQKPISTL
DNRTIVITSHPGQIVKHGDIKCVLNEGMPIYRRPYEKGRLIIEFKVNFPENGFLSPDKLSLLEKLLPERK
EVEETDEMDQVELVDFDPNQERRRHYNGEAYEDDEHHPRGGVQCQTS


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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