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Report for CCDS6676.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6676.1 Public Homo sapiens 9 SPATA31E1 24 110 108 CCDS HistoryNCBI Gene:286234Re-query CCDS DB by CCDS ID:6676.1Re-query CCDS DB by GeneID:286234See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6676.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000325643.6 ENSP00000322640.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000325643.6Link to Ensembl Protein Viewer:ENSP00000322640.5Re-query CCDS DB by Nucleotide ID:ENST00000325643Re-query CCDS DB by Protein ID:ENSP00000322640
Original member Current member NCBI NM_178828.5 NP_849150.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_178828.5Link to Protein Sequence:NP_849150.3Re-query CCDS DB by Nucleotide ID:NM_178828Re-query CCDS DB by Protein ID:NP_849150Link to BLAST:NP_849150.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_849150.3 1445 Q6ZUB1 1445 100% 0 0

Chromosomal Locations for CCDS 6676.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 87882892 87883200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 87883992 87884046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 87884591 87884651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 87884913 87888825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4338 nt):
ATGGGAAATCTCGTCATCCCTCTAGGGAAGGGCAGGGCAGGCAGGGTTGAGAGTGGGCAGAGGATTCCAC
CCCCAGCTCCCAGACCATCTGTGGAGTGCACAGGAGACGACATTGCACTTCAGATGGAGAAAATGCTCTT
TCCTCTGAAGAGCCCTAGTGCCACATGGCTGAGCCCTAGCTCCACTCCCTGGATGATGGATTTCATCCTC
ACCAGTGTGTGTGGCCTAGTGCTCCTCTTCCTATTGCTCCTCTACGTCCACAGTGACCCACCCTCACCCC
CGCCCGGGAGGAAGAGGAGCAGCAGGGAGCCTCAAAGGGAGAGAAGCGGGAGGTCCAGGAGCAGGAAGAT
CTCAGCTCTGAAAGCTTGCAGAATCCTCCTGAGGGAGCTGGAGGAGACTCGGGACCTGAACTACCTTCTG
GAAAGCCACCTGAGGAAGCTCGCTGGCGAAGGCAGCTCCCACCTGCCCTTAGGTGGAGACCCCCTGGGGG
ACGTGTGTAAACCAGTGCCTGCTAAGGCCCACCAGCCGCATGGGAAATGCATGCAAGATCCGTCTCCTGC
CAGCTTGTCCCCACCAGCTCCCCCAGCTCCTCTGGCCTCCACCCTGTCACCAGGCCCGATGACCTTCTCA
GAGCCTTTTGGACCACACTCAACCCTGAGTGCCTCCGGGCCACCAGAGCCCTTGCTTCCCCTAAAATGCC
CTGCAACCCAGCCACATGTGGTTTTTCCTCCTTCACCACAGCCGCATGGTCCCCTGGCCTCCTCTCCACC
TCCACCCGACTCCAGCCTGGCTGGACTTCAGTGTGGCTCCACAACATGCCCCGTCCCCCAGAGCTCCCCT
CTACACAACCAGGTGCTGCCTCCTCCAACCAGGGTGATCTCTGGCCTGGGGTGCTCCAGCGATCCCATCT
GGGACCTCTATTGCTGGAGGGAGGCTGCCACCACCTGGGGCCTCTCCACCTACTCACATGGCAAATCCCA
GCCACGGCATCTTCCCGACCACACCTCAGAGGCTTCCTTCTGGGGAGACCCCACACCCAAGCACATGGAG
GTAGGTGGCTGCACATTCATCCACCCTGACGTGCAGAAGCTGCTGGAGACCCTCATCGCCAAGAGAGCAC
TGATGAAGATGTGGCAGGAGAAAGAAAGAAAACGGGCCGACCACCCGCACATGACATCACTGGGGAAGGA
GTGGGACATCACGACCCTAAATCCCTTCTGGAACGTGTCAACCCAGCCACAGCAGCTGCCCCGTCCTCAG
CAAGTCTCTGATGCCACAACCGTGGGGAACCACTTACAGCAGAAACGCAGCCAGCTTTTCTGGGACCTCC
CCTCTCTCAATAGCGAGTCCCTGGCGACCACAGTCTGGGTTTCTAGGAACCCTTCCTCACAGAATGCACA
CTCTGTACCACTGGATAAAGCCTCCACTTCTCTTCCAGGTGAACCTGAGGTTGAGGCATCCTCACAGCTT
TCCCAGGCACCGCCCCAGCCCCACCACATGGCCCAGCCCCAACATTTCACTCCAGCCTGGCCCCAGTCCC
AGCCCCCACCTTTGGCTGAGATCCAGACCCAGGCCCACCTCTCACCCCCTGTCCCAAGCCTGGGGTGCTC
TTCTCCACCCCAGATTAGGGGCTGTGGGGCATCTTACCCTACATCCCAGGAGAGGACACAGTCTGTCATC
CCCACTGGAAAGGAGTATCTTGAATGGCCCTTGAAGAAGCGACCAAAGTGGAAGAGGGTTTTGCCCTCTC
TCCTCAAAAAGTCTCAGGCTGTTCTGAGCCAGCCCACTGCCCACCTTCCCCAAGAGAGGCCGGCCTCCTG
GAGCCCCAAGTCAGCCCCCATCCTTCCCGGGGTTGTCACCAGCCCTGAGCTCCCAGAGCACTGGTGGCAA
GGAAGGAATGCCATCCACCAGGAGCAGTCCTGTGGCCCTCCCAGCAGATTGCAGGCATCTGGGGACCTGC
TACAGCCTGATGGGGAATTCCCAGGGAGGCCCCAGAGTCAGGCAGAAGACACGCAGCAGGCCCTCTTGCC
CTCCCAGCCTTCTGACTTTGCAGGGAAGGGCAGGAAGGATGTGCAGAAGACCGGGTTCAGGAGCTCCGGA
AGGTTCTCTGACAAGGGGTGCTTAGGGTCCAAACTAGGGCCGGACCCAAGCCGGGATCAAGGCTCAGGAA
GGACCTCAGTGAAGGCTCTGGACGAAGACAAGGAGGCAGAAGGTGACTTACGGAGGTCCTGGAAGTACCA
ATCAGTAAGTTCCACACCCAGGGACCCAGACAAGGAGCATCTGGAAAACAAGCTGCAAATCCATCTGGCC
AGGAAGGTAGGGGAGATCAAAGAGGGCTGGATCCCCATGCCTGTGCGTCGCTCCTGGCTCATGGCCAAAT
GTGCTGTTCCCAAGTCTGACACCCACAGGAAACCTGGGAAGCTGGCATCCTGGAGGGGTGGGAAAGCCCA
CGTGAACACCTCCCAGGAGCTTTCCTTCCTCCATCCCTGCACCCAGCAGATACTGGAAGTACATCTTGTA
AGGTTCTGTGTGAGGCACAGCTGGGGTACAGACCTCCAGTCCCTGGAGCCCATAAATGTCTGGTCAGGTG
AGGCTCAGGCCCCGCCCTTCCCACAATCCACCTTTACCCCCTGGGCCTCCTGGGTATCTCGGGTTGAATC
TGTACCCAAGGTTCCCATTTTCCTGGGAAAACGTCCTCAGAATGGTCCAGGAGACAACAGAACAACAAGC
AAGTCAGTCCCGACCGTGAGTGGCCCTCTCGCTGCCCCACCGCCTGAGCAGGAGGGAGTCCAGAGGCCCC
CGAGAGGGTCCCAGTCAGCTGATACCCATGGGCGATCAGAGGCCTTTCCGACTGGACACAAGGGCAGGGG
GTGTTCTCAGCCCCCAACATGCAGCCTTGTGGGCAGAACCTGGCAGAGCAGGACTGTCCTGGAATCCGGG
AAACCCAAACCCAGACTAGAGGGGAGTATGGGTTCAGAAATGGCTGGGAACGAGGCATGGCTTGAGAGTG
AGAGCATGTCCCCAGGAGACCCCTGTAGTAGCAGAGCCCTGCAAGTGCTCAGCATAGGGTCCCAGTGGGC
AAGGGCTGAAGATGCCCTGCAGGCACTGAAAGTGGGGGAGAAGCCCCCAACTTGGGAAGTCACCTTGGGA
GCCAGTGTGAGGGCAAGTTCGGGAAGTGTTCAGGAGGATCTGAGGAGCACAGGGGCTCTGGGGACCACTG
GTAACCCCTCAGCGTCTTCAGTCTGTGTTGCTCAGGATCCAGAGCAGCTGCACCTGAAAGCGCAGGTGGT
CAGTGAGATTGCGCTCATAGTGCAGGTGGACTCAGAGGAGCAGCTGCCAGGCCGTGCCCCGGGCATCCTC
CTCCAGGACGGCGCCACAGGCCTGTGCCTTCCAGGCCGCCACATGGACATGCTCACTGCCGCAGACAGGC
TGCCCACTCAAGCCCCTCTGTCCACCTCCCAGAGTGTGTCTGGTAAGAACATGACAGCTTCCCAGGGGCC
ATGTGCCCTCCTATGGAAGGGAGGGGACAGTCCAGGGCAGCAGGAGCCTGGGAGCCCAAAAGCAAAGGCC
CCACAGAAGAGTCAGAAGACGCTGGGCTGTGCGGACAAGGGCGAGGCCCACAGGAGGCCCAGAACAGGGG
AGCAGGGACACAGGTCCAAGGGACCCAGGACCTCTGAAGCCAGTGGGAGGAGCCACCCTGCCCAAGCCAG
GGAAATAGGAGACAAACAAGAAAGGAAATACAACCAGCTTCAGCTGGAGAAGGGACAGACACCACCAGAA
AGCCACTTCCAGAGAAAGATCAGTCACCATCCACAGGGTCTACACCCCAGGAAAGGAGGCACACGGTGGG
AAGATGTCCTGCAGAAAGGCAAGCCTGGGGCAGATGCTTTCCAGAGCTGGGGGTCTGGCCCACCAAGGCA
GTTTATGGACTGCATGGCTGACAAAGCCTGGACCATCAGCAGAGTTGTGGGACAAATCCTGGTGGACAAA
CTGGGGCTTCAGTGGGGACGAGGTCCCTCAGAGGTCAATCGCCACAAAGGTGACTTCCGCGCCCAGGAGA
ATGTGCCTTCCTGCTGCCACAGGGGTCACTGCCACCAAGAACGTAGCAGAGAGATGAGAGCTCTGGCCTG
CAGCCCTAAAGCCACCCCCAAGGGCCACCACTGTCCTGTCAAAAACAGGGGCATCAGAGACAGAGACAGC
AGTTGGGCCCCACCTCCCAGGGAGCCTGTGTCCCCAGCTGGTCCCCACCACCACAGGCCAAGAATGGCAA
GCACCTCGGGCGGCCCCCATCCACAGCTGCAGGAACTGATGTCTGCACAGAGGTGTCTTGCCTCCTGA

Translation (1445 aa):
MGNLVIPLGKGRAGRVESGQRIPPPAPRPSVECTGDDIALQMEKMLFPLKSPSATWLSPSSTPWMMDFIL
TSVCGLVLLFLLLLYVHSDPPSPPPGRKRSSREPQRERSGRSRSRKISALKACRILLRELEETRDLNYLL
ESHLRKLAGEGSSHLPLGGDPLGDVCKPVPAKAHQPHGKCMQDPSPASLSPPAPPAPLASTLSPGPMTFS
EPFGPHSTLSASGPPEPLLPLKCPATQPHVVFPPSPQPHGPLASSPPPPDSSLAGLQCGSTTCPVPQSSP
LHNQVLPPPTRVISGLGCSSDPIWDLYCWREAATTWGLSTYSHGKSQPRHLPDHTSEASFWGDPTPKHME
VGGCTFIHPDVQKLLETLIAKRALMKMWQEKERKRADHPHMTSLGKEWDITTLNPFWNVSTQPQQLPRPQ
QVSDATTVGNHLQQKRSQLFWDLPSLNSESLATTVWVSRNPSSQNAHSVPLDKASTSLPGEPEVEASSQL
SQAPPQPHHMAQPQHFTPAWPQSQPPPLAEIQTQAHLSPPVPSLGCSSPPQIRGCGASYPTSQERTQSVI
PTGKEYLEWPLKKRPKWKRVLPSLLKKSQAVLSQPTAHLPQERPASWSPKSAPILPGVVTSPELPEHWWQ
GRNAIHQEQSCGPPSRLQASGDLLQPDGEFPGRPQSQAEDTQQALLPSQPSDFAGKGRKDVQKTGFRSSG
RFSDKGCLGSKLGPDPSRDQGSGRTSVKALDEDKEAEGDLRRSWKYQSVSSTPRDPDKEHLENKLQIHLA
RKVGEIKEGWIPMPVRRSWLMAKCAVPKSDTHRKPGKLASWRGGKAHVNTSQELSFLHPCTQQILEVHLV
RFCVRHSWGTDLQSLEPINVWSGEAQAPPFPQSTFTPWASWVSRVESVPKVPIFLGKRPQNGPGDNRTTS
KSVPTVSGPLAAPPPEQEGVQRPPRGSQSADTHGRSEAFPTGHKGRGCSQPPTCSLVGRTWQSRTVLESG
KPKPRLEGSMGSEMAGNEAWLESESMSPGDPCSSRALQVLSIGSQWARAEDALQALKVGEKPPTWEVTLG
ASVRASSGSVQEDLRSTGALGTTGNPSASSVCVAQDPEQLHLKAQVVSEIALIVQVDSEEQLPGRAPGIL
LQDGATGLCLPGRHMDMLTAADRLPTQAPLSTSQSVSGKNMTASQGPCALLWKGGDSPGQQEPGSPKAKA
PQKSQKTLGCADKGEAHRRPRTGEQGHRSKGPRTSEASGRSHPAQAREIGDKQERKYNQLQLEKGQTPPE
SHFQRKISHHPQGLHPRKGGTRWEDVLQKGKPGADAFQSWGSGPPRQFMDCMADKAWTISRVVGQILVDK
LGLQWGRGPSEVNRHKGDFRAQENVPSCCHRGHCHQERSREMRALACSPKATPKGHHCPVKNRGIRDRDS
SWAPPPREPVSPAGPHHHRPRMASTSGGPHPQLQELMSAQRCLAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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