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Report for CCDS6032.2 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
6032.2 |
Public |
Homo sapiens |
8 |
PDLIM2 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:64236](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:6032.2](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:64236](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 8 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public Note for CCDS 6032.1 |
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript data. The extended N-terminus appears to be restricted to higher primate species. |
Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23
Review status: Reviewed (by RefSeq, Havana and CCDS collaboration) Sequence IDs included in CCDS 6032.2
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000308354.11 |
ENSP00000312634.7 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000308354.11](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000312634.7](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000308354](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000312634](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000339162.11 |
ENSP00000342035.8 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000339162.11](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000342035.8](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000339162](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000342035](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_021630.6 |
NP_067643.3 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_021630.6](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_067643.3](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_021630](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_067643](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_067643.3](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_067643.3 |
602 |
Q96JY6-5 |
602 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 6032.2
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1809 nt): ATGCGGGGCGGGAGAGCGCGGCCGGCGTGGGAGAGCTTTATGGGGCTGCCCCCTCGATCGTCTGCGAAGT GGGGCGCGGGGCAGTCCCTGGACCGGCTCTGCTGTGCTCCGGGCAGTCGGGGGCTTGCGGGCGCTCCGGG GAGGATGCGGGCACCACCGGCTGGACGGTCGCAGCCTGCAGGGGGCCCTGGGGACAGCCTGCCTCATCCC CCCGGCGGGCTCGGGCCAGGTGGCAGCGCCTGGGCTCGCCGCGCGGAGGCGGCGGCTTCTCGGGCTAGGG GCGGCGGCAGGGGCGGCCCCGGGATCACATGGGCGGAGGCAGGTCCGGGAGCCCCGGGCGGGCTCTCCCC AGAGTCGGGTAGACGGCAGCGGGAGCGGTGGCGTCTCCCCGCCTTCCCTCCCTCCCGGGCCTGGGCGCCC AGCCGGACAGGTGAGCGGCAGCCAGGTGAGCGCGCCCACCTGCGCCTCTCCGCGCGGCCCGCCCTCCCCG GCGCCGGGCTCCTCTCCGCGCCCCTGTCGGCGCGGAACCCTGGCCTCGTCCGCGGCCCAGCTCCCTGGAG CCTCGCATCAGCGGGGGCGCCCCCGCGAGCTGCGCTCTCCCCGGCCGGAGCGCTCCTCCTCCAGCCCCCA GCCCGCAGGGTACTTTGCCCTCGGAGCGAAGGAGGCTCCAGAACTGGTAGAGCCGGGCCATCGGGCTGGG CACCTCCCCGCGGCGCCCGCAGCGCGGAGTCCACTGACCGGCTCAAAGGTATGGCGTTGACGGTGGATGT GGCCGGGCCAGCGCCCTGGGGCTTCCGTATCACAGGGGGCAGGGATTTCCACACGCCCATCATGGTGACT AAGGTGGCCGAGCGGGGCAAAGCCAAGGACGCTGACCTCCGGCCTGGAGACATAATCGTGGCCATCAACG GGGAAAGCGCGGAGGGCATGCTGCATGCCGAGGCCCAGAGCAAGATCCGCCAGAGCCCCTCGCCCCTGCG GCTGCAGCTGGACCGGTCTCAGGCTACGTCTCCAGGGCAGACCAATGGGGACAGCTCCTTGGAAGTGCTG GCGACTCGCTTCCAGGGCTCCGTGAGGACATACACTGAGAGTCAGTCCTCCTTAAGGTCCTCCTACTCCA GCCCAACCTCCCTCAGCCCGAGGGCCGGCAGCCCCTTCTCACCACCACCCTCTAGCAGCTCCCTCACTGG AGAGGCAGCCATCAGCCGCAGCTTCCAGAGTCTGGCATGTTCCCCGGGCCTCCCCGCTGCTGACCGCCTG TCCTACTCAGGCCGCCCTGGAAGCCGACAGGCCGGCCTCGGCCGCGCTGGCGACTCGGCGGTGCTGGTGC TGCCGCCTTCCCCGGGCCCTCGTTCCTCCAGGCCCAGCATGGACTCGGAAGGGGGAAGCCTCCTCCTGGA CGAGGACTCGGAAGTCTTCAAGATGCTGCAGGAAAATCGCGAGGGACGGGCGGCCCCCCGACAGTCCAGC TCCTTTCGGCTCTTGCAGGAAGCCCTGGAGGCTGAGGAGAGAGGTGGCACGCCAGCCTTCTTGCCCAGCT CACTGAGCCCCCAGTCCTCCCTGCCCGCCTCCAGGGCCCTGGCCACCCCTCCCAAGCTCCACACTTGTGA GAAGTGCAGTACCAGCATCGCGAACCAGGCTGTGCGCATCCAGGAGGGCCGGTACCGCCACCCCGGCTGC TACACCTGTGCCGACTGTGGGCTGAACCTGAAGATGCGCGGGCACTTCTGGGTGGGTGACGAGCTGTACT GTGAGAAGCATGCCCGCCAGCGCTACTCCGCACCTGCCACCCTCAGCTCTCGGGCCTGA
Translation (602 aa): MRGGRARPAWESFMGLPPRSSAKWGAGQSLDRLCCAPGSRGLAGAPGRMRAPPAGRSQPAGGPGDSLPHP PGGLGPGGSAWARRAEAAASRARGGGRGGPGITWAEAGPGAPGGLSPESGRRQRERWRLPAFPPSRAWAP SRTGERQPGERAHLRLSARPALPGAGLLSAPLSARNPGLVRGPAPWSLASAGAPPRAALSPAGALLLQPP ARRVLCPRSEGGSRTGRAGPSGWAPPRGARSAESTDRLKGMALTVDVAGPAPWGFRITGGRDFHTPIMVT KVAERGKAKDADLRPGDIIVAINGESAEGMLHAEAQSKIRQSPSPLRLQLDRSQATSPGQTNGDSSLEVL ATRFQGSVRTYTESQSSLRSSYSSPTSLSPRAGSPFSPPPSSSSLTGEAAISRSFQSLACSPGLPAADRL SYSGRPGSRQAGLGRAGDSAVLVLPPSPGPRSSRPSMDSEGGSLLLDEDSEVFKMLQENREGRAAPRQSS SFRLLQEALEAEERGGTPAFLPSSLSPQSSLPASRALATPPKLHTCEKCSTSIANQAVRIQEGRYRHPGC YTCADCGLNLKMRGHFWVGDELYCEKHARQRYSAPATLSSRA
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