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Report for CCDS3544.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3544.2 Public Homo sapiens 4 ENAM 24 110 108 CCDS HistoryNCBI Gene:10117Re-query CCDS DB by CCDS ID:3544.2Re-query CCDS DB by GeneID:10117See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 3544.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000396073.4 ENSP00000379383.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000396073.4Link to Ensembl Protein Viewer:ENSP00000379383.4Re-query CCDS DB by Nucleotide ID:ENST00000396073Re-query CCDS DB by Protein ID:ENSP00000379383
Original member Current member NCBI NM_031889.3 NP_114095.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_031889.3Link to Protein Sequence:NP_114095.2Re-query CCDS DB by Nucleotide ID:NM_031889Re-query CCDS DB by Protein ID:NP_114095Link to BLAST:NP_114095.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_114095.2 1142 Q9NRM1 1142 100% 0 0

Chromosomal Locations for CCDS 3544.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 70629501 70629554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70631670 70631738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70631849 70631893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70632651 70632692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70634308 70634568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70635832 70635894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70637790 70637843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70642015 70644855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3429 nt):
ATGTTGGTGCTTCGGTGCAGGCTTGGAACCTCTTTTCCTAAACTAGATAACTTGGTACCAAAAGGCAAAA
TGAAGATTCTCCTGGTCTTTCTAGGGCTTCTTGGTAATTCTGTTGCTATGCCAATGCACATGCCCCGAAT
GCCTGGATTTAGCAGTAAAAGTGAGGAGATGATGCGGTATAATCAATTCAACTTTATGAACGGCCCACAT
ATGGCACACCTGGGGCCCTTCTTTGGAAACGGTCTCCCTCAGCAATTTCCACAGTACCAGATGCCCATGT
GGCCTCAGCCACCACCCAACACATGGCATCCACGGAAATCCTCAGCACCCAAACGTCATAACAAGACTGA
TCAGACCCAAGAAACCCAGAAACCCAACCAGACTCAGTCAAAAAAGCCACCACAAAAGCGGCCTTTGAAG
CAGCCATCACATAATCAACCTCAGCCCGAAGAGGAAGCTCAACCCCCTCAGGCATTCCCACCATTTGGAA
ATGGGCTATTCCCCTATCAACAACCACCATGGCAAATTCCACAGAGGTTACCACCACCAGGTTATGGACG
CCCACCAATCAGCAATGAAGAAGGGGGGAATCCTTACTTTGGATATTTTGGATATCATGGCTTTGGGGGT
CGCCCTCCTTATTATTCAGAAGAAATGTTTGAACAAGATTTTGAAAAACCCAAAGAAGAAGATCCTCCTA
AAGCAGAAAGTCCAGGCACAGAACCCACAGCTAATTCAACAGTCACTGAGACGAATTCTACCCAACCAAA
TCCTAAAGGGAGTCAGGGAGGAAATGACACCAGCCCCACAGGAAACAGTACCCCAGGACTAAACACTGGG
AACAACCCTCCAGCTCAAAATGGGATTGGCCCACTCCCTGCAGTCAACGCTTCAGGCCAGGGAGGGCCAG
GAAGTCAAATCCCATGGAGACCAAGTCAGCCAAATATTCGTGAAAATCATCCATATCCTAATATAAGAAA
TTTTCCTTCAGGAAGACAGTGGTATTTCACTGGTACTGTCATGGGGCACAGACAGAATAGGCCTTTTTAC
AGAAATCAACAAGTTCAAAGGGGTCCTCGGTGGAACTTCTTTGCTTGGGAACGTAAACAAGTAGCTCGTC
CAGGAAATCCAGTTTATCACAAAGCTTACCCTCCTACTTCAAGAGGCAATTATCCCAATTATGCAGGAAA
TCCAGCAAATCTCAGAAGAAAGCCTCAGGGGCCAAATAAACACCCTGTAGGAACTACTGTTGCCCCACTG
GGTCCCAAACCTGGCCCTGTTGTTCGCAATGAAAAAATCCAAAATCCAAAGGAGAAGCCCCTGGGTCCAA
AAGAACAAATAATAGTTCCTACAAAGAATCCAACCAGCCCCTGGAGAAACTCTCAACAGTATGAAGTTAA
TAAATCAAATTATAAACTGCCTCACTCTGAGGGTTATATGCCAGTCCCAAATTTTAATTCTGTTGATCAA
CATGAAAACTCCTATTACCCAAGAGGAGATTCCAGAAAAGTCCCAAATTCTGATGGACAAACCCAAAGCC
AGAATTTGCCCAAAGGGATTGTTTTAGGGTCAAGAAGGATGCCATATGAATCAGAAACTAATCAGTCAGA
ATTAAAGCACAGCTCATATCAGCCTGCTGTATACCCTGAGGAAATCCCTTCTCCTGCAAAAGAACATTTT
CCTGCTGGAAGAAATACTTGGGACCACCAAGAAATCTCTCCACCTTTTAAGGAAGATCCAGGGAGGCAAG
AAGAACATTTACCCCATCCTTCCCATGGTTCTAGAGGAAGTGTTTTCTACCCTGAATATAACCCATATGA
TCCCAGGGAAAACTCACCATACCTTAGAGGCAATACATGGGATGAGAGAGATGATTCTCCCAATACTATG
GGGCAAAAAGAAAGTCCACTCTACCCCATAAATACCCCAGACCAGAAGGAGATAGTCCCTTATAATGAAG
AGGACCCAGTTGATCCAACTGGAGATGAAGTCTTTCCTGGACAAAATAGATGGGGTGAAGAGTTGAGCTT
CAAAGGAGGCCCAACAGTTAGGCACTATGAAGGTGAACAATATACCTCAAATCAGCCAAAGGAATATCTT
CCCTATTCTTTAGATAATCCATCAAAACCAAGGGAGGATTTTTATTACAGTGAATTTTACCCATGGAGCC
CGGATGAGAATTTTCCATCATATAATACAGCTTCTACTATGCCACCACCTATAGAGAGCAGGGGCTACTA
CGTTAATAATGCCGCTGGACCAGAAGAAAGCACTCTATTTCCTTCACGGAATTCCTGGGACCACAGGATA
CAAGCCCAAGGGCAGAGAGAAAGAAGGCCGTATTTTAACAGAAATATCTGGGATCAGGCAACACATTTAC
AAAAAGCCCCAGCTAGGCCACCAGACCAGAAAGGTAACCAGCCCTATTACAGTAACACCCCAGCTGGGCT
TCAGAAAAATCCAATATGGCATGAAGGTGAGAATTTGAACTATGGCATGCAAATAACTAGGATGAATTCT
CCAGAGAGAGAACATTCATCTTTCCCTAACTTCATCCCACCAAGTTACCCATCAGGTCAAAAAGAAGCAC
ATTTATTTCACCTAAGCCAGAGAGGCTCTTGCTGTGCTGGTAGCTCCACAGGGCCCAAGGACAATCCACT
AGCTCTACAAGACTACACTCCATCCTATGGTCTTGCACCTGGGGAGAACCAAGACACCAGTCCTCTGTAT
ACAGACGGTAGTCATACCAAGCAGACAAGAGATATCATCTCCCCAACAAGCATCCTACCAGGCCAAAGAA
ACAGCTCAGAGAAGAGGGAAAGCCAAAACCCTTTTAGAGATGATGTGTCCACGCTGAGGAGGAACACACC
ATGTTCTATAAAGAATCAACTGGGCCAAAAGGAAATTATGCCCTTTCCTGAAGCCAGTTCCCTTCAATCA
AAGAATACACCTTGTCTCAAAAATGATCTTGGAGGAGATGGGAACAACATTCTGGAACAAGTTTTTGAAG
ACAACCAGCTCAATGAAAGAACTGTTGACCTTACTCCTGAGCAGCTTGTTATTGGTACACCTGATGAAGG
CTCCAATCCAGAAGGCATCCAAAGTCAAGTCCAAGAAAATGAGAGTGAGAGGCAACAGCAAAGACCATCT
AACATTCTGCATTTGCCATGCTTTGGCTCCAAATTAGCAAAGCATCACTCTTCCACCACCGGAACTCCAT
CTAGCGATGGAAGGCAAAGCCCATTTGATGGGGATTCAATTACGCCTACTGAAAATCCTAACACATTGGT
TGAGTTAGCTACTGAGGAACAATTTAAGAGTATAAATGTAGACCCACTTGATGCAGATGAACACAGTCCA
TTTGAATTCCTTCAAAGAGGGACCAATGTACAGGACCAGGTACAAGACTGCTTACTACTTCAGGCCTAG

Translation (1142 aa):
MLVLRCRLGTSFPKLDNLVPKGKMKILLVFLGLLGNSVAMPMHMPRMPGFSSKSEEMMRYNQFNFMNGPH
MAHLGPFFGNGLPQQFPQYQMPMWPQPPPNTWHPRKSSAPKRHNKTDQTQETQKPNQTQSKKPPQKRPLK
QPSHNQPQPEEEAQPPQAFPPFGNGLFPYQQPPWQIPQRLPPPGYGRPPISNEEGGNPYFGYFGYHGFGG
RPPYYSEEMFEQDFEKPKEEDPPKAESPGTEPTANSTVTETNSTQPNPKGSQGGNDTSPTGNSTPGLNTG
NNPPAQNGIGPLPAVNASGQGGPGSQIPWRPSQPNIRENHPYPNIRNFPSGRQWYFTGTVMGHRQNRPFY
RNQQVQRGPRWNFFAWERKQVARPGNPVYHKAYPPTSRGNYPNYAGNPANLRRKPQGPNKHPVGTTVAPL
GPKPGPVVRNEKIQNPKEKPLGPKEQIIVPTKNPTSPWRNSQQYEVNKSNYKLPHSEGYMPVPNFNSVDQ
HENSYYPRGDSRKVPNSDGQTQSQNLPKGIVLGSRRMPYESETNQSELKHSSYQPAVYPEEIPSPAKEHF
PAGRNTWDHQEISPPFKEDPGRQEEHLPHPSHGSRGSVFYPEYNPYDPRENSPYLRGNTWDERDDSPNTM
GQKESPLYPINTPDQKEIVPYNEEDPVDPTGDEVFPGQNRWGEELSFKGGPTVRHYEGEQYTSNQPKEYL
PYSLDNPSKPREDFYYSEFYPWSPDENFPSYNTASTMPPPIESRGYYVNNAAGPEESTLFPSRNSWDHRI
QAQGQRERRPYFNRNIWDQATHLQKAPARPPDQKGNQPYYSNTPAGLQKNPIWHEGENLNYGMQITRMNS
PEREHSSFPNFIPPSYPSGQKEAHLFHLSQRGSCCAGSSTGPKDNPLALQDYTPSYGLAPGENQDTSPLY
TDGSHTKQTRDIISPTSILPGQRNSSEKRESQNPFRDDVSTLRRNTPCSIKNQLGQKEIMPFPEASSLQS
KNTPCLKNDLGGDGNNILEQVFEDNQLNERTVDLTPEQLVIGTPDEGSNPEGIQSQVQENESERQQQRPS
NILHLPCFGSKLAKHHSSTTGTPSSDGRQSPFDGDSITPTENPNTLVELATEEQFKSINVDPLDADEHSP
FEFLQRGTNVQDQVQDCLLLQA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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