CCDS Report for Consensus CDS

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Report for CCDS89052.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
89052.1	Public	Mus musculus	17	Mdga1	23	108	98

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89052.1

Original	Current	Source	Nucleotide ID	Protein ID	Status in CCDS	Seq. Status	Links
		EBI	ENSMUST00000171691.8	ENSMUSP00000126529.1	Accepted	alive
		NCBI	NM_001368423.1	NP_001355352.1	Accepted	alive

RefSeq	Length	Related UniProtKB/SwissProt	Length	Identity	Gaps	Mismatches
NP_001355352.1	956	Q0PMG2	956	100%	0	0

Chromosomal Locations for CCDS 89052.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)

Genome Browser links:

Chromosome	Start	Stop
17	29832308	29832399
17	29832913	29833021
17	29833222	29833352
17	29837992	29838126
17	29838437	29838589
17	29839549	29839572
17	29839805	29839982
17	29840797	29840948
17	29842119	29842406
17	29842845	29843141
17	29846321	29846650
17	29849157	29849426
17	29849640	29849772
17	29850492	29850688
17	29852442	29852616
17	29857590	29857729
17	29887447	29887513

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2871 nt):
ATGGAGGTGACCTGTCTTCTACTTCTGGCGCTTATCCCCTTCCACTGTCGGGGACAAGGAGTCTATGCTC CAGCCCAGGCCCAGATTGTGCATGCGGGGCAGGCCTGTGTGGTGAAGGAGGATAACATCAGCGAGCGGGT CTACACCATCCGGGAGAGCGACACCCTGGTGCTGCAGTGCCTGGTCACGGGACACCCTCGGCCCCAGGTG CGGTGGACCAAAACTGCCGGCAGCGCATCGGACAAGTTCCAGGAGACGTCGGTCTTCAATGAGACTCTGC GGATCGAGCGCATCGCACGCACGCAGGGAGGTCGCTACTACTGCAAGGCGGAGAACGGAGTGGGCGTGCC GGCCATCAAGTCTATCCGCGTGGACGTGCAGTACTTGGATGAGCCTGTGCTAACGGTGCATCAGACAGTG AGCGATGTCCGAGGCAACTTCTACCAGGAGAAGACCGTGTTTCTACGCTGTACCGTCAGCTCCAACCCGC CCGCCCGCTTTATCTGGAAGCGGGGCTCCGACACCCTGTCCCACAGCCAGGATAATGGGGTTGACATCTA CGAGCCTCTCTATACTCAGGGGGAGACGAAGGTCCTGAAGCTGAAGAACCTGCGGCCCCAAGACTATGCC AGCTACACCTGCCAGGTGTCCGTGCGCAATGTGTGCGGCATCCCAGACAAGGCTATCACCTTCCAGCTCA CCAACACCACGGCACCTCCAGCCTTGAAGCTGTCTGTGAACGAAACTCTGGTGGTGAACCCTGGGGAGAA CGTGACAGTGCAGTGTCTGCTGACGGGCGGCGATCCCCTCCCCCAGCTGCACTGGTCCCACGGACCTGGC CCACTGCCCCTGGGTGCTCTGGCTCAGGGTGGTACCCTCAGCATCCCTTCAGTGCAGGCCCGGGATTCTG GCTACTACAACTGCACAGCCACCAACAATGTAGGCAACCCAGCTAAGAAGACCGTCAACCTGCTGGTGCG ATCCCTGAAGAACGCCACATTCCAGATCACCCCCGACATGATCAAAGAAAGCGAGAACATTCAACTCGGT CAGGACCTGAAGCTGTCATGCCATGTGGATGCGGTGCCCCAGGAGAAGGTGAACTATCAGTGGTTTAAAA ACGGCAAGCCGGCACGCACATCCAAGCGGCTGCTGGTGACCCGAAATGACCCCGAGTTGCCCGCTGTCAC CAGCAGCCTGGAGCTCATTGACCTGCACTTCAGTGACTACGGCACTTATCTGTGCATGGCTTCCTTCCCA GGGTCACCAGTGCCTGACCTCAGCATAGAGGTCAACATTTCCTCAGAGACAGTACCACCCACCATCAGTG TGCCCAAGGGCCGAGCAGTGGTGACAGTGAGGGAGGGCTCTCCTGCTGAGCTCCAGTGCGAAGTTCGTGG CAAGCCCCGGCCTCCAGTGCTATGGTCTCGGGTGGACAAGGAGGCCGCCCTTCTGCCCTCGGGGCTGGCC CTGGAGGAGACTCCGGATGGGAAGCTGCGGCTGGAGAGTGTGAGCCGCGACATGAGCGGCACCTACCGCT GCCAGACAGCTCGCTACAATGGCTTCAACGTACGACCCCGGGAGGCTCAGGTGCAGCTGACAGTGCACTT TCCTCCAGAGGTGGAGCCCAGTTCCCAGGACGTGCGCCAGGCGCTGGGCCGGCCTGTGCTCCTGCGCTGC TCGCTTCTGCGTGGCAGTCCTCAGCGCATCGCCTCGGCCGTGTGGCGCTTCAAAGGACAGCTGCTGCCCC CACCGCCTGTTCTCCCCGCCGCTGCTGTGGAGACCCCCGATCACGCCGAGCTGCGCCTGGACGCCCTGAC CCGTGACAGCAGCGGCAACTACGAGTGCAGCGTCTCCAACGACGTGGGCTCAGCCACCTGCCTCTTCCAG GTCTCCGCCAAAGCCTACAGCCCGGAGTTTTACTTCGACACCCCCAACCCCACCCGCAGCCACAAGCTGT CCAAGAATTACTCCTATGTGCTACAGTGGACACAGAGAGAGCCCGATGCTGTGGACCCCGTGCTCAACTA CAGACTCAGCATCCGACAGTTGAACCAGCACAATGCCATGGTCAAGGCCATCCCCGTTCGTCGTGTGGAG AAGGGACAGCTGCTGGAGTATATCTTGACTGACCTCCGAGTACCCCACAGCTATGAGATCCGCCTCACAC CCTACACCACCTTTGGGGCTGGTGACATGGCTTCCCGCATCATCCACTACACAGAGCCTATCAACTTGCC CAGCCTGTCAGACAACACCTGTCACTTTGAGGATGAGAAAATCTGCGGCTACACCCAGGATCTGACAGAC AACTTTGACTGGACGCGGCAGAATGCTCTTACCCAGAACCCCAAGCGCTCTCCTAATACTGGGCCCCCTA CTGACATCAGTGGCACCCCTGAAGGCTATTACATGTTCATTGAGACATCCAGACCCAGGGAGCTGGGGGA CCGTGCAAGGCTGGTGAGTCCCCTGTACAACGCCAGTGCCAAGTTCTACTGTGTCTCTTTCTTCTACCAC ATGTATGGGAAACACATCGGCTCCCTCAACCTTCTGGTGCGGTCCAGGAACAAAGGCACTCTAGACACGC ATGCCTGGTCCCTCAGTGGCAATAAGGGTAACGTGTGGCAGCAGGCCCATGTACCCATTAACCCCAGTGG GCCCTTCCAGATTATTTTTGAGGGGGTTCGAGGCTCGGGCTACCTGGGGGATATTGCCATAGATGATGTC ACACTGAAGAAGGGAGAGTGTCCCCGGAGGCAGATGGATCCCAACAAAGTGGTTGTGATGCCAGGCAGCG GAGCCCCACGCCTGTCCAGCCTGCAACTTTGGGGATCCATGGCCATCTTCCTCTTGGCGTTGCAAAGATG A
Translation (956 aa):
MEVTCLLLLALIPFHCRGQGVYAPAQAQIVHAGQACVVKEDNISERVYTIRESDTLVLQCLVTGHPRPQV RWTKTAGSASDKFQETSVFNETLRIERIARTQGGRYYCKAENGVGVPAIKSIRVDVQYLDEPVLTVHQTV SDVRGNFYQEKTVFLRCTVSSNPPARFIWKRGSDTLSHSQDNGVDIYEPLYTQGETKVLKLKNLRPQDYA SYTCQVSVRNVCGIPDKAITFQLTNTTAPPALKLSVNETLVVNPGENVTVQCLLTGGDPLPQLHWSHGPG PLPLGALAQGGTLSIPSVQARDSGYYNCTATNNVGNPAKKTVNLLVRSLKNATFQITPDMIKESENIQLG QDLKLSCHVDAVPQEKVNYQWFKNGKPARTSKRLLVTRNDPELPAVTSSLELIDLHFSDYGTYLCMASFP GSPVPDLSIEVNISSETVPPTISVPKGRAVVTVREGSPAELQCEVRGKPRPPVLWSRVDKEAALLPSGLA LEETPDGKLRLESVSRDMSGTYRCQTARYNGFNVRPREAQVQLTVHFPPEVEPSSQDVRQALGRPVLLRC SLLRGSPQRIASAVWRFKGQLLPPPPVLPAAAVETPDHAELRLDALTRDSSGNYECSVSNDVGSATCLFQ VSAKAYSPEFYFDTPNPTRSHKLSKNYSYVLQWTQREPDAVDPVLNYRLSIRQLNQHNAMVKAIPVRRVE KGQLLEYILTDLRVPHSYEIRLTPYTTFGAGDMASRIIHYTEPINLPSLSDNTCHFEDEKICGYTQDLTD NFDWTRQNALTQNPKRSPNTGPPTDISGTPEGYYMFIETSRPRELGDRARLVSPLYNASAKFYCVSFFYH MYGKHIGSLNLLVRSRNKGTLDTHAWSLSGNKGNVWQQAHVPINPSGPFQIIFEGVRGSGYLGDIAIDDV TLKKGECPRRQMDPNKVVVMPGSGAPRLSSLQLWGSMAIFLLALQR

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

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