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Report for CCDS16650.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16650.1 Public Mus musculus 2 Golm2 23 108 98 CCDS HistoryNCBI Gene:319996Re-query CCDS DB by CCDS ID:16650.1Re-query CCDS DB by GeneID:319996See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16650.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000089912.11 ENSMUSP00000087357.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000089912.11Link to Ensembl Protein Viewer:ENSMUSP00000087357.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000089912Re-query CCDS DB by Protein ID:ENSMUSP00000087357
Original member Current member NCBI NM_177054.5 NP_796028.2 Accepted alive Link to Nucleotide Sequence:NM_177054.5Link to Protein Sequence:NP_796028.2Re-query CCDS DB by Nucleotide ID:NM_177054Re-query CCDS DB by Protein ID:NP_796028Link to BLAST:NP_796028.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_796028.2 402 Q6P2L7-2 402 100% 0 0

Chromosomal Locations for CCDS 16650.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 121867205 121867531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121898798 121898852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121901182 121901284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121903062 121903152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121905930 121906071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121906698 121906778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121911871 121912041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121925561 121925728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121933478 121933548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1209 nt):
ATGGTGGGTTTCGGGGCCAACCGGCGGGCCGGCCGCCTGCCGTCCTTCGTGCTGGTGGTGCTACTGGTAG
TCATCGTCGTCCTTGCCTTCAACTACTGGAGCATCTCCTCCCGCCACGTTCTGCTTCAGGAGGAGGTGGC
CGAGCTGCAGGGCCAGGTCCAGCGCACCGAGGTGGCCCGCGGGCGCTTGGAGAAGCGCAATTCGGACCTC
TTGCTCTTGGTGGACACGCATAAGAAGCAGATCGACCAGAAGGAGGCCGATTACGGTCGCCTCAGCAGCC
GGCTGCAGGCCAAGGAAGGCCTGGGGAAGAGATGCGAGGATGACAAGGTTAAGCTACAAAACAACATATC
ATATCAGATGGCAGACATACATCATTTAAAGGAGCAACTGGCTGAGCTTCGTCAGGAGTTTCTTCGACAG
GAAGATCAGCTTCAAGACTACAGGAAAAATAATACCTACCTTGTCAAGCGGCTAGAATACGAGAGTTTTC
AGTGTGGACAGCAGATCAAGGAGTTAAGAGCACAACATGAAGAAAATATTAAAAAATTAGCAGATCAGTT
TTTGCAGGAACAAAAGGAGACTCATAAGATTCAATCAAATGATGGAAAAGAATTGGGTAGAAACGATCAT
GGAGCACCTAAAAATATTCCAAATGTGCCTGAAAATGATGCAAATAAGAATGAAGACCCCTCAAGCAATC
ATCTTCCCCATGGGAAAGAACAACTCAAACGAGTTGGTGATGCAGGGATGCCTGGAGTAGAAGAGAATGA
CCTAGCAAAAGTAGACGAGCTTCCTGCTGGTTCACATCTAAACCAGAATGAAAATCCCAGTACTTCAAAA
CAGAACCCTTCAAATCCTCTTCAGCACATAATTCCAGGCCCAAACTTGGATCGGGAACCCAGAATTCAAA
CAGACACGTTAAAGCAGGCCACCAGGGACAGAGCCAATGATTTCCACAAGTTGAAGCAAAGCCGGTTCTT
TGATGAGAATGAATCCCCTGTTGATCCGCAGCATGGCTCTAAACTGGCGGATTATAATGGGGATGATGGT
AACGTAGGTGAGTATGAGGCAGACAAGCAGGCTGAGCTGGCTTACAATGAGGAAGAAGATGGTGATGGTG
GAGAGGAAGACGTCCAAGATGATGAAGAACGAGAGCTTCAGATGGATCCTGCAGACTATGGCAAACAGCG
CTTCAGTGATGTCCTTTAA

Translation (402 aa):
MVGFGANRRAGRLPSFVLVVLLVVIVVLAFNYWSISSRHVLLQEEVAELQGQVQRTEVARGRLEKRNSDL
LLLVDTHKKQIDQKEADYGRLSSRLQAKEGLGKRCEDDKVKLQNNISYQMADIHHLKEQLAELRQEFLRQ
EDQLQDYRKNNTYLVKRLEYESFQCGQQIKELRAQHEENIKKLADQFLQEQKETHKIQSNDGKELGRNDH
GAPKNIPNVPENDANKNEDPSSNHLPHGKEQLKRVGDAGMPGVEENDLAKVDELPAGSHLNQNENPSTSK
QNPSNPLQHIIPGPNLDREPRIQTDTLKQATRDRANDFHKLKQSRFFDENESPVDPQHGSKLADYNGDDG
NVGEYEADKQAELAYNEEEDGDGGEEDVQDDEERELQMDPADYGKQRFSDVL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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