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Report for CCDS25846.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25846.1 Public Mus musculus 12 Id2 23 108 98 CCDS HistoryNCBI Gene:15902Re-query CCDS DB by CCDS ID:25846.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25846.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020974.6 ENSMUSP00000020974.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020974.6Link to Ensembl Protein Viewer:ENSMUSP00000020974.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000020974Re-query CCDS DB by Protein ID:ENSMUSP00000020974
Original member Current member EBI ENSMUST00000221761.1 ENSMUSP00000152052.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000221761.1Link to Ensembl Protein Viewer:ENSMUSP00000152052.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000221761Re-query CCDS DB by Protein ID:ENSMUSP00000152052
Original member Current member NCBI NM_010496.3 NP_034626.1 Accepted alive Link to Nucleotide Sequence:NM_010496.3Link to Protein Sequence:NP_034626.1Re-query CCDS DB by Nucleotide ID:NM_010496Re-query CCDS DB by Protein ID:NP_034626Link to BLAST:NP_034626.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034626.1 134 P41136 134 100% 0 0

Chromosomal Locations for CCDS 25846.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 25095318 25095374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 25095663 25096010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (405 nt):
ATGAAAGCCTTCAGTCCGGTGAGGTCCGTTAGGAAAAACAGCCTGTCGGACCACAGCTTGGGCATCTCCC
GGAGCAAAACCCCGGTGGACGACCCGATGAGTCTGCTCTACAACATGAACGACTGCTACTCCAAGCTCAA
GGAACTGGTGCCCAGCATCCCCCAGAACAAGAAGGTGACCAAGATGGAAATCCTGCAGCACGTCATCGAT
TACATCTTGGACCTGCAGATCGCCCTGGACTCGCATCCCACTATCGTCAGCCTGCATCACCAGAGACCTG
GACAGAACCAGGCGTCCAGGACGCCGCTGACCACCCTGAACACGGACATCAGCATCCTGTCCTTGCAGGC
ATCTGAATTCCCTTCTGAGCTTATGTCGAATGATAGCAAAGTACTCTGTGGCTAA

Translation (134 aa):
MKAFSPVRSVRKNSLSDHSLGISRSKTPVDDPMSLLYNMNDCYSKLKELVPSIPQNKKVTKMEILQHVID
YILDLQIALDSHPTIVSLHHQRPGQNQASRTPLTTLNTDISILSLQASEFPSELMSNDSKVLCG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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