NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS29766.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29766.1 Public Mus musculus 19 Ifit1 23 108 98 CCDS HistoryNCBI Gene:15957Re-query CCDS DB by CCDS ID:29766.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29766.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102824.3 ENSMUSP00000099888.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102824.3Link to Ensembl Protein Viewer:ENSMUSP00000099888.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000102824Re-query CCDS DB by Protein ID:ENSMUSP00000099888
Original member NCBI NM_008331.3 NP_032357.2 Updated not alive Link to Nucleotide Sequence:NM_008331.3Link to Protein Sequence:NP_032357.2Re-query CCDS DB by Nucleotide ID:NM_008331Re-query CCDS DB by Protein ID:NP_032357
Current member NCBI NM_008331.4 NP_032357.2 Accepted alive Link to Nucleotide Sequence:NM_008331.4Link to Protein Sequence:NP_032357.2Re-query CCDS DB by Nucleotide ID:NM_008331Re-query CCDS DB by Protein ID:NP_032357Link to BLAST:NP_032357.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032357.2 463 Q64282 463 100% 0 0

Chromosomal Locations for CCDS 29766.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 34640983 34640987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34647471 34648857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1392 nt):
ATGGGAGAGAATGCTGATGGTGACCAGGTCATGGAGAATCTGCTTCAGCTGAGATGTCACTTCACATGGA
AGCTGCTATTTGAAAATAATGACATACCTGATTTGGAAGTGAGAATCTCAGAGCAGGTCCAGTTCCTTGA
CATCAAGAACCCATTGGGGATGCACAACCTCCTGGCCTACGTGAGGCACCTGAAAGGCCAGCAGGACGAA
GCCCTGCAGAGCTTGAAAGAAGCTGAAGCCTTGATCCAGAGCGAGCAGCTGAGCAAGAGAAGCCTGGCGA
CCTGGGGCAACTGTGCCTGGCTGCATTACCACAGGGGCAGCTTGGCAGAAGCCCAGATCTACCTGGACAA
GGTGGAGAAGGTGTGCAAGGAATTTTCAAGTCCCTTCCGCTACAGGCTGGAGTGTGCTGAGATGGACTGT
GAGGAAGGCTGGGCCTTGCTGAAGTGTGGAGGAGGAAATTATAAACAAGCCATGGCCTGCTTTGCGAAGG
CTCTGAAAGTGGAGCCAGAAAACCCTGAGTACAACACTGGCTATGCAGTCGTAGCCTATCGCCAAGATTT
AGATGACAACTTTATTTCTCTAGAACCTTTGAGGAAGGCTGTCCGGTTAAATCCAGAAGATCCATACCTT
AAAGTTCTCCTTGCCCTAAAGCTTCAGGATTTAGGAGAACATGTTGAAGCAGAAGCACACATTGAAGAAG
CCCTCAGCAGCACATCTTGCCAAAGCTATGTCATTCGCTATGCAGCCAAATATTTCCGTAGGAAACATCG
CGTAGACAAAGCTCTTCATCTTCTAAACAGGGCCTTGCAGGCATCACCTTCCTCTGGCTACTTACATTAT
CAAAAAGGGCTCTGCTACAAGCAACAAATCTCCCAACTGAGGACATCCCGAAACAGGCAGCCCAGAAGGC
AGGACAATGTGCAAGAATTGGCACAACAGGCCATTCATGAATTTCAAGAGACTTTGAAACTGAGGCCCAC
ATTTGAGATGGCCTATGTTTGCATGGCTGAAGTGCAGGCAGAAATTCACCAGTATGAAGAAGCAGAGAGA
AATTTCCAGAAGGCACTGAACAACAAGACCCTCGTGGCTCACATAGAGCAGGATATTCACCTCCGCTATG
GCCGTTTCCTACAGTTTCATAAGCAGTCAGAAGACAAGGCAATCACCCTCTACTTAAAAGGTCTAAAAGT
GGAAGAGAAGTCCTTTGCTTGGAGGAAACTACTGACTGCTTTGGAGAAAGTGGCTGAAAGACGTGTTTGT
CAGAATGTTCATCTTGTAGAGAGTACCAGCCTTCTTGGGCTAGTCTACAAACTGAAAGGACAAGAGAAAA
ATGCTCTGTTTTACTATGAGAAGGCACTGAGGCTCACTGGGGAAATGAACCCTGCATTCTGA

Translation (463 aa):
MGENADGDQVMENLLQLRCHFTWKLLFENNDIPDLEVRISEQVQFLDIKNPLGMHNLLAYVRHLKGQQDE
ALQSLKEAEALIQSEQLSKRSLATWGNCAWLHYHRGSLAEAQIYLDKVEKVCKEFSSPFRYRLECAEMDC
EEGWALLKCGGGNYKQAMACFAKALKVEPENPEYNTGYAVVAYRQDLDDNFISLEPLRKAVRLNPEDPYL
KVLLALKLQDLGEHVEAEAHIEEALSSTSCQSYVIRYAAKYFRRKHRVDKALHLLNRALQASPSSGYLHY
QKGLCYKQQISQLRTSRNRQPRRQDNVQELAQQAIHEFQETLKLRPTFEMAYVCMAEVQAEIHQYEEAER
NFQKALNNKTLVAHIEQDIHLRYGRFLQFHKQSEDKAITLYLKGLKVEEKSFAWRKLLTALEKVAERRVC
QNVHLVESTSLLGLVYKLKGQEKNALFYYEKALRLTGEMNPAF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH