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Report for CCDS7860.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7860.2 Public Homo sapiens 11 SLC5A12 24 110 108 CCDS HistoryNCBI Gene:159963Re-query CCDS DB by CCDS ID:7860.2See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 7860.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000396005.8 ENSP00000379326.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000396005.8Link to Ensembl Protein Viewer:ENSP00000379326.3Re-query CCDS DB by Nucleotide ID:ENST00000396005Re-query CCDS DB by Protein ID:ENSP00000379326
Original member Current member NCBI NM_178498.4 NP_848593.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_178498.4Link to Protein Sequence:NP_848593.2Re-query CCDS DB by Nucleotide ID:NM_178498Re-query CCDS DB by Protein ID:NP_848593Link to BLAST:NP_848593.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848593.2 618 Q1EHB4-1 618 100% 0 0

Chromosomal Locations for CCDS 7860.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 26671102 26671251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 26673402 26673529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 26678712 26678815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 26681055 26681221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 26683757 26683843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 26686477 26686544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 26692489 26692601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 26697164 26697252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 26698406 26698535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 26703531 26703671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 26703793 26703947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 26709312 26709379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 26711307 26711358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 26712641 26712706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 26721376 26721714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1857 nt):
ATGGAGGTGAAGAACTTTGCAGTTTGGGATTATGTTGTATTTGCAGCCCTCTTTTTCATTTCCTCTGGAA
TTGGGGTGTTCTTTGCCATTAAGGAGAGAAAAAAGGCAACTTCCCGAGAGTTCCTGGTTGGGGGAAGGCA
AATGAGCTTTGGCCCTGTCGGCTTGTCTCTGACAGCCAGCTTCATGTCAGCTGTCACGGTCCTGGGGACC
CCTTCTGAAGTCTACCGCTTTGGGGCATCCTTCCTAGTCTTCTTCATTGCTTACCTATTTGTCATCCTCT
TAACATCAGAGCTCTTTCTCCCTGTGTTCTACAGATCTGGTATCACCAGCACTTATGAGTACTTACAACT
ACGATTCAACAAACCAGTTCGCTATGCTGCCACGGTCATCTACATTGTACAGACGATTCTCTACACAGGA
GTGGTGGTGTATGCTCCTGCCCTGGCACTCAATCAAGTGACTGGGTTTGATCTCTGGGGCTCTGTGTTTG
CAACAGGAATTGTTTGCACATTCTACTGTACCCTGGGAGGATTAAAAGCAGTGGTGTGGACAGATGCATT
TCAGATGGTTGTCATGATTGTGGGCTTCTTAACGGTTCTCATTCAAGGATCAACTCATGCTGGGGGATTC
CACAATGTATTAGAGCAATCAACAAATGGATCTCGACTACATATATTTGACTTTGATGTAGATCCTCTCA
GGCGACACACTTTTTGGACTATCACAGTGGGAGGAACTTTTACTTGGCTCGGAATCTATGGGGTCAATCA
ATCAACTATTCAGCGATGCATCTCTTGCAAAACAGAAAAGCATGCTAAGCTTGCCTTGTATTTTAACTTG
CTGGGTCTCTGGATCATTCTGGTGTGTGCTGTCTTCTCTGGCTTAATCATGTACTCTCACTTTAAAGACT
GTGACCCTTGGACTTCTGGCATCATCTCAGCACCAGACCAGCTGATGCCGTACTTTGTCATGGAGATATT
TGCCACAATGCCAGGACTGCCAGGACTTTTTGTGGCTTGTGCCTTCAGTGGAACTCTGAGCACCGTGGCT
TCCAGCATCAATGCCTTGGCAACAGTGACCTTTGAGGATTTTGTCAAGAGCTGTTTTCCTCATCTCTCCG
ACAAGCTGAGCACCTGGATCAGTAAAGGCTTATGTCTCTTATTTGGCGTGATGTGTACCTCTATGGCTGT
GGCTGCATCTGTCATGGGAGGTGTTGTGCAGGCTTCCCTCAGCATTCACGGCATGTGTGGAGGACCAATG
CTGGGCTTATTCTCCCTGGGAATCGTGTTCCCTTTTGTGAATTGGAAGGGTGCACTAGGAGGTCTTCTTA
CTGGAATCACCTTGTCATTTTGGGTGGCCATTGGGGCCTTCATTTACCCTGCACCAGCCTCTAAGACATG
GCCTTTGCCTCTGTCAACAGACCAATGTATCAAATCAAATGTGACAGCAACAGGGCCTCCAGTACTATCC
AGCAGACCTGGAATAGCTGATACCTGGTACTCGATCTCCTACCTTTACTACAGTGCAGTGGGCTGCTTAG
GATGCATTGTTGCTGGAGTAATCATCAGCCTCATAACAGGTCGCCAAAGAGGTGAGGATATTCAACCACT
GTTAATTAGACCAGTTTGTAATTTATTTTGCTTTTGGTCTAAGAAGTACAAAACACTATGCTGGTGTGGA
GTTCAGCATGACAGTGGGACAGAGCAGGAAAACCTTGAGAATGGCAGTGCCCGGAAACAGGGGGCTGAAT
CTGTCTTACAGAACGGACTCAGAAGAGAAAGCCTGGTACATGTTCCAGGCTATGATCCTAAGGACAAAAG
CTACAACAATATGGCATTTGAGACTACCCATTTCTAA

Translation (618 aa):
MEVKNFAVWDYVVFAALFFISSGIGVFFAIKERKKATSREFLVGGRQMSFGPVGLSLTASFMSAVTVLGT
PSEVYRFGASFLVFFIAYLFVILLTSELFLPVFYRSGITSTYEYLQLRFNKPVRYAATVIYIVQTILYTG
VVVYAPALALNQVTGFDLWGSVFATGIVCTFYCTLGGLKAVVWTDAFQMVVMIVGFLTVLIQGSTHAGGF
HNVLEQSTNGSRLHIFDFDVDPLRRHTFWTITVGGTFTWLGIYGVNQSTIQRCISCKTEKHAKLALYFNL
LGLWIILVCAVFSGLIMYSHFKDCDPWTSGIISAPDQLMPYFVMEIFATMPGLPGLFVACAFSGTLSTVA
SSINALATVTFEDFVKSCFPHLSDKLSTWISKGLCLLFGVMCTSMAVAASVMGGVVQASLSIHGMCGGPM
LGLFSLGIVFPFVNWKGALGGLLTGITLSFWVAIGAFIYPAPASKTWPLPLSTDQCIKSNVTATGPPVLS
SRPGIADTWYSISYLYYSAVGCLGCIVAGVIISLITGRQRGEDIQPLLIRPVCNLFCFWSKKYKTLCWCG
VQHDSGTEQENLENGSARKQGAESVLQNGLRRESLVHVPGYDPKDKSYNNMAFETTHF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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