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Report for CCDS14945.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14945.2 Public Mus musculus 1 Mfsd6 23 108 98 CCDS HistoryNCBI Gene:98682Re-query CCDS DB by CCDS ID:14945.2Re-query CCDS DB by GeneID:98682See the combined annotation on chromosome 1 in Sequence Viewer

Public Note for CCDS 14945.1
The coding region has been updated to extend the N-terminus to one that is more supported by available conservation, transcript and protein data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 14945.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000156876.7 ENSMUSP00000122881.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000156876.7Link to Ensembl Protein Viewer:ENSMUSP00000122881.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000156876Re-query CCDS DB by Protein ID:ENSMUSP00000122881
Original member NCBI NM_133829.2 NP_598590.2 Updated not alive Link to Nucleotide Sequence:NM_133829.2Link to Protein Sequence:NP_598590.2Re-query CCDS DB by Nucleotide ID:NM_133829Re-query CCDS DB by Protein ID:NP_598590
Current member NCBI NM_133829.3 NP_598590.2 Accepted alive Link to Nucleotide Sequence:NM_133829.3Link to Protein Sequence:NP_598590.2Re-query CCDS DB by Nucleotide ID:NM_133829Re-query CCDS DB by Protein ID:NP_598590Link to BLAST:NP_598590.2

Chromosomal Locations for CCDS 14945.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 52658342 52658545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52660807 52661087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52662390 52662488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52663285 52663446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52676478 52676575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52708164 52709704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2385 nt):
ATGGCTGCTGATGATAAAGTTGCTATCCTAACTGATGATGAAGAGGAGCAGAAGAGAAAATATGTGCTTG
CTGATCCCTTCAATGGCATCTGCAGGGAACCAGAACCACCTTCTAATGAAACCCCCTCCTCCACAGAGAC
CTCAGCCATTCCCGAGGAGGAAATAGACTGGATAGAGAAACATTGTGTGAAAGTCAACAATGACCTTCTC
ATCTCCAAGGTGTTTTATTTTTTCTTTTACTCTGCCTATGGCTCTCTTTACCCTCTCTTACCTGTATATT
ATAAACAGCTGGGAATGTCACCTAGCCAGAGTGGACTGTTGGTGGGCATTCGATACTTCATTGAATTCTG
CAGTGCCCCCTTCTGGGGTGTAGTTGCAGATCGTTTCAGAAAGGGCAAAATTGTCCTCCTCTTTTCGCTT
CTGTGTTGGGTTTTGTTCAACCTGGGCATTGGATTTGTCAAACCTGCTACCTTGAGATGTCTACCAAAGA
TCCCCCCAACAGCTCACCCCACCAATGTAAGTCACCCAGTAACTGTTCTGCCAATGAACTCCTCCACTGT
CGCTTTCTTTAGCACACCACCAAAATTGCTCCAGAAAAGGGACGTGCAATTGTCTGAAACAGAGCCCAAT
ATCTCAGACATAGATCTCGTGTCAACAGCATTGACCTTGACCAGTGAACCCACACGGAGGCCCCAGACAG
AGGCAATTACCCACCCTGTTACAGGCTTGATTTTGAACACAAGCACAGTGACTCTGCCCCCCACAGGAAA
TGTCACCAGGGAGACAACCATTGCTGTGGTCACCACCACCAAATCTTTACCATCTGATCAAGTCACCCTT
GTGTATGACCAACAGGAAGTTGAGGCGATATTCTTAATTATCTTAGTGGTTGTCATAATAGGAGAATTTT
TCAGTGCCTCTTCTGTCACGATTGTAGATACAGTAACCCTCCAGTACCTGGGAAAACACCGAGACCGATA
TGGGCTACAGCGCATGTGGGGCTCCCTGGGCTGGGGCCTGGCCATGCTGTCTGTGGGTATTGGAATCGAC
TATACTCATATAGATGTGCTCATTGATGGGAAGGGGTGTAAGCCCCCTGAGTACCGGAACTACCAGATTG
TCTTCATCGTCTTTGGAGTTCTCATGACCATGGCCCTGATCGTTGCCACTCAGTTCCGGTTCCGCTACAA
CCACTTCAACAATAGTGATGGTAAAGGGAAAGAGGTGGAGATCCCACAGGTGGAAAGGGACAACTCCACA
GAGTCCTCTGAAGAGACTCCAACTGCCGCGACTCACTCACAGGCCTTCAACTTCTGGGACTTGATCAAGT
TGCTATGCAGTGTGCAGTATGGCTCGGTTCTGTTTGTGGCCTGGTTCATGGGTTTTGGATACGGCTTCGT
GTTCACCTTTCTCTACTGGCATCTGGAAGACCTAAATGGAACTACAACCCTCTTTGGGGTCTGTTCAGTC
CTGAGTCATGTGTCCGAGTTGACCGCTTACTTCTTCAGCCACAAGCTTATTGAGTTGATTGGCCATATCA
GGGTTTTATACATTGGCCTGGCCTGTAATACAGCTCGCTATATTTACATTTCCTACCTGGAAAATGCCTG
GACTGTCCTCCCTATGGAAGTTCTTCAAGGTGTCACACACGCAGCCATCTGGGCAGCGTGCATCTCTTAC
CTCAGTGCAGCTGTCCCCCCTGAGCTGAGGACTTCTGCACAGGGAATCCTGCAAGGCCTTCATCTGGGTC
TGGGGCGAGGATGTGGTGCCATGATCGGAGGCGTGTTAGTCAATTATTTTGGGGCTGCTGCAACTTTCCG
AGGGATTGGCATGGCTTGCCTGGTGATCCTTCTCCTCTTTGCCCTGATCCAGTGGCTGGCAGTACCAGAT
GAAGAAGAAGACAAGACAATGTTGGCAGAAAGGATCCCAGTTCCCTCTAGTCCCGTTCCCATAGCAACCA
TTGACCTGGTACAGCAACAGACAGAAGATGTCATGCCACGCGTTGAGGCCAGACTTCCGCCCAAGAAAAC
CAAGCACCAGGAAGAGCAGGAAGATGTAAATAAACCGGCCTGGGGGGTCAGCTCCTCGCCTTGGGTGACC
TTTGTCTATGCTCTCTACCAAGTTAAAGAGCTAATTCAACTGACAAGAGAGAGCCGTGCTTCTGAGATAC
AACCTTTACAGGGGACCAGTGAGAATCGGGAAGCCTCTCCAGCTGGTGGAGCCCAGCGTGCCCCACGTGA
AACTCACTCCGCCTCACCTAGAAACCAGCCATCCCCTGACACAGCAGCATCTCAAACGCAGTCCAGCCCT
GCTCACCCCAGTGCTACCCCGCATGGACAGGAGAGTGGAGAGAAGCAGGCTCAGCCCACTGTGGGAGAAC
ACTGA

Translation (794 aa):
MAADDKVAILTDDEEEQKRKYVLADPFNGICREPEPPSNETPSSTETSAIPEEEIDWIEKHCVKVNNDLL
ISKVFYFFFYSAYGSLYPLLPVYYKQLGMSPSQSGLLVGIRYFIEFCSAPFWGVVADRFRKGKIVLLFSL
LCWVLFNLGIGFVKPATLRCLPKIPPTAHPTNVSHPVTVLPMNSSTVAFFSTPPKLLQKRDVQLSETEPN
ISDIDLVSTALTLTSEPTRRPQTEAITHPVTGLILNTSTVTLPPTGNVTRETTIAVVTTTKSLPSDQVTL
VYDQQEVEAIFLIILVVVIIGEFFSASSVTIVDTVTLQYLGKHRDRYGLQRMWGSLGWGLAMLSVGIGID
YTHIDVLIDGKGCKPPEYRNYQIVFIVFGVLMTMALIVATQFRFRYNHFNNSDGKGKEVEIPQVERDNST
ESSEETPTAATHSQAFNFWDLIKLLCSVQYGSVLFVAWFMGFGYGFVFTFLYWHLEDLNGTTTLFGVCSV
LSHVSELTAYFFSHKLIELIGHIRVLYIGLACNTARYIYISYLENAWTVLPMEVLQGVTHAAIWAACISY
LSAAVPPELRTSAQGILQGLHLGLGRGCGAMIGGVLVNYFGAAATFRGIGMACLVILLLFALIQWLAVPD
EEEDKTMLAERIPVPSSPVPIATIDLVQQQTEDVMPRVEARLPPKKTKHQEEQEDVNKPAWGVSSSPWVT
FVYALYQVKELIQLTRESRASEIQPLQGTSENREASPAGGAQRAPRETHSASPRNQPSPDTAASQTQSSP
AHPSATPHGQESGEKQAQPTVGEH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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