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Report for CCDS52166.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52166.1 Public Mus musculus 7 Capn12 23 108 98 CCDS HistoryNCBI Gene:60594Re-query CCDS DB by CCDS ID:52166.1Re-query CCDS DB by GeneID:60594See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52166.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000066880.5 ENSMUSP00000069055.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000066880.5Link to Ensembl Protein Viewer:ENSMUSP00000069055.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000066880Re-query CCDS DB by Protein ID:ENSMUSP00000069055
Original member Current member NCBI NM_001110807.1 NP_001104277.1 Accepted alive Link to Nucleotide Sequence:NM_001110807.1Link to Protein Sequence:NP_001104277.1Re-query CCDS DB by Nucleotide ID:NM_001110807Re-query CCDS DB by Protein ID:NP_001104277Link to BLAST:NP_001104277.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001104277.1 720 Q9ER56-1 720 99.8611% 0 1

Chromosomal Locations for CCDS 52166.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 28881724 28881960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28882551 28882620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28882770 28882888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28883128 28883261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28885728 28885896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28886371 28886445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28886533 28886618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28886698 28886772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28887573 28887736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28887820 28888055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28888419 28888430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28888612 28888820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28889073 28889115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28889197 28889256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28889781 28889838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28890156 28890226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28890324 28890386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28890911 28890989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28892619 28892735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28892823 28892881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28892962 28892988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2163 nt):
ATGGCGAGTGGCAACAGGAAGGTCACCATCCAGCTGGTGGACGACGGGGCCGGGACTGGAGCTGGGGGCC
CACAGCTCTTTAAAGGCCAGAACTACGAAGCCATCCGAAGAGCTTGCCTGGATTCCGGGATCCTGTTTCG
TGACCCTTGCTTTCCTGCTGGCCCTGATGCCCTTGGCTATGACAAGCTGGGACCTGACTCAGAGAAGGCC
AAAGGGGTGGAATGGAAGAGGCCCCATGAGTTTTGTGCTGAGCCCCAGTTCATCTGTGAAGACATGAGCA
GAACAGATGTGTGCCAGGGAAGCTTGGGAAACTGCTGGCTTCTTGCAGCTGCTGCCTCCCTCACACTCTA
CCCCAGGCTCCTGTACCGGGTGGTCCCCCCTGGACAAGGTTTCCAAGATGGCTACGCGGGGGTCTTCCAT
TTTCAGCTATGGCAGTTTGGCCGCTGGGTGGATGTGGTGGTAGACGACAAACTGCCTGTGCGTGAGGGGA
AGCTGATGTTCGTGCGCTCAGAACAAAGGAACGAGTTCTGGGCCCCTCTGCTGGAAAAGGCCTATGCCAA
GCTCCATGGCTCCTACGAGGTAATGCGAGGAGGTCACATGAACGAGGCTTTTGTGGACTTTACAGGAGGC
GTGGGTGAGGTCCTCTACTTGAGACAAAACACTCCAGGTGTCTTTGCTGCCCTTCGCCACGCATTGGCCA
AGGAGTCCCTTGTGGGTGCTACTGCCCTGAGTGATCGGGGTGAGATCCGCACAGATGAAGGGCTGGTGAA
GGGACATGCTTATTCTGTCACAGGCACGCACAAGATGTCTCTGGGCTTCACCAAGGTGCGGCTGCTGCGG
CTGAGGAACCCCTGGGGCCGCGTGGAGTGGTCCGGGCCCTGGAGTGACAGCTGCCCACGCTGGGACATGC
TCCCTTCTGAGTGGCGAGATGCCCTGCTTGTGAAAAAGGAGGATGGCGAGTTCTGGATGGAGCTTCAAGA
CTTTCTCACGCACTTCAACACAGTGCAGATTTGTTCACTGAGTCCTGAGGTGTTGGGCCCCAGCCCTGCT
GGCGGCGGCTGGCATATCCACATCTTCCAGGGCCGCTGGGTGCGAGGCTTCAACTCCGGTGGGAGTCAGC
CCAGCGCTGAAAACTTCTGGACCAACCCCCAGTTCCGGCTGACACTGCTGGAGCCTGATGAGGAAGAGGA
TGACGATGATGAAGAGGGACCCTGGGGAGGCTGGGGAGCGGCAGGGGCCCGGGGCCCGGCGAGAGGAGGC
CGAGTCCCCAAGTGCACGGTCCTGTTGTCACTCATCCAGCGCAACCGCCGGTGTCTGAGGGCCAAGGGCC
TCACTTACCTCACTGTGGGCTTCCACGTGTTCCAGATTCCGGAGGAGCTGCTGGACCTCTGGGACTCCCC
GCGCAGCCGCGCGCTCTTGCCGGGACTGCTGCGCGCCGACCGCTCGGTTTTCTGCGCCCGCCGCGACGTG
AGCCGTCGCTGTCGCCTGCCGCCTGGCCACTACCTGGTGGTACCCAGCGCCTCGCGCGTAGGCGATGAAG
CCGACTTCACTCTGCGCATCTTCTCGGAGCGCAGCCACACCGCAGTGGAGATCGATGACGTGATCAGCGC
AGACCTGGACGCCCTCCAGGCCCCCTACAAGCCCCTGGAGCTGGAGTTGGCACAGCTATTTTTGGAGCTG
GCTGGAGAGGAGGAGGAACTCAACGCGCTTCAGCTGCAGACCTTAATAAGCATTGCTCTGGAACCTGCGA
GGGCCAACACCAGGACCCCTGGAGAGATTGGGCTTAGGACCTGCGAACAGCTTGTGCAGTGTTTTGGGCG
TGGGCAAAGACTGTCCCTACACCACTTCCAGGAGCTCTGGGGCCATCTCATGTCATGGCAGGCCACATTT
GACAAGTTTGATGAAGATGCCTCTGGGACAATGAACTCCTGTGAACTGAGGCTGGCACTGACTGCTGCAG
GCTTCCACCTCAACAACCAGCTGACCCAGTCCCTCACTAGCCGCTACCGGGACAGCCGGCTCCGTGTGGA
CTTCGAGCGCTTCGTGTGCTGTGCAGCCCGGCTCACCTGCATCTTCCGCCACTGCTGCCAACACCTGGAT
GGCGGCGAGGGGGTCGTCTGCCTGACCCACAAACAGTGGTCGGAGGTGGCTACCTTCTCATAG

Translation (720 aa):
MASGNRKVTIQLVDDGAGTGAGGPQLFKGQNYEAIRRACLDSGILFRDPCFPAGPDALGYDKLGPDSEKA
KGVEWKRPHEFCAEPQFICEDMSRTDVCQGSLGNCWLLAAAASLTLYPRLLYRVVPPGQGFQDGYAGVFH
FQLWQFGRWVDVVVDDKLPVREGKLMFVRSEQRNEFWAPLLEKAYAKLHGSYEVMRGGHMNEAFVDFTGG
VGEVLYLRQNTPGVFAALRHALAKESLVGATALSDRGEIRTDEGLVKGHAYSVTGTHKMSLGFTKVRLLR
LRNPWGRVEWSGPWSDSCPRWDMLPSEWRDALLVKKEDGEFWMELQDFLTHFNTVQICSLSPEVLGPSPA
GGGWHIHIFQGRWVRGFNSGGSQPSAENFWTNPQFRLTLLEPDEEEDDDDEEGPWGGWGAAGARGPARGG
RVPKCTVLLSLIQRNRRCLRAKGLTYLTVGFHVFQIPEELLDLWDSPRSRALLPGLLRADRSVFCARRDV
SRRCRLPPGHYLVVPSASRVGDEADFTLRIFSERSHTAVEIDDVISADLDALQAPYKPLELELAQLFLEL
AGEEEELNALQLQTLISIALEPARANTRTPGEIGLRTCEQLVQCFGRGQRLSLHHFQELWGHLMSWQATF
DKFDEDASGTMNSCELRLALTAAGFHLNNQLTQSLTSRYRDSRLRVDFERFVCCAARLTCIFRHCCQHLD
GGEGVVCLTHKQWSEVATFS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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