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Report for CCDS54279.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54279.1 Public Homo sapiens 19 ERCC1 24 110 108 CCDS HistoryNCBI Gene:2067Re-query CCDS DB by CCDS ID:54279.1Re-query CCDS DB by GeneID:2067See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54279.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000340192.11 ENSP00000345203.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000340192.11Link to Ensembl Protein Viewer:ENSP00000345203.6Re-query CCDS DB by Nucleotide ID:ENST00000340192Re-query CCDS DB by Protein ID:ENSP00000345203
Original member Current member NCBI NM_001166049.2 NP_001159521.1 Accepted alive Link to Nucleotide Sequence:NM_001166049.2Link to Protein Sequence:NP_001159521.1Re-query CCDS DB by Nucleotide ID:NM_001166049Re-query CCDS DB by Protein ID:NP_001159521Link to BLAST:NP_001159521.1
Original member Current member NCBI NM_001369417.1 NP_001356346.1 Accepted alive Link to Nucleotide Sequence:NM_001369417.1Link to Protein Sequence:NP_001356346.1Re-query CCDS DB by Nucleotide ID:NM_001369417Re-query CCDS DB by Protein ID:NP_001356346Link to BLAST:NP_001356346.1
Original member Current member NCBI NM_001369418.1 NP_001356347.1 Accepted alive Link to Nucleotide Sequence:NM_001369418.1Link to Protein Sequence:NP_001356347.1Re-query CCDS DB by Nucleotide ID:NM_001369418Re-query CCDS DB by Protein ID:NP_001356347Link to BLAST:NP_001356347.1
Original member Current member NCBI NM_001369419.1 NP_001356348.1 Accepted alive Link to Nucleotide Sequence:NM_001369419.1Link to Protein Sequence:NP_001356348.1Re-query CCDS DB by Nucleotide ID:NM_001369419Re-query CCDS DB by Protein ID:NP_001356348Link to BLAST:NP_001356348.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001159521.1 273 P07992-2 273 100% 0 0
NP_001356346.1 273 P07992-2 273 100% 0 0
NP_001356347.1 273 P07992-2 273 100% 0 0
NP_001356348.1 273 P07992-2 273 100% 0 0

Chromosomal Locations for CCDS 54279.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 45409675 45409725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45413677 45413745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45414861 45414960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45416821 45416897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45419098 45419197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45420324 45420427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45421178 45421393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45423270 45423374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (822 nt):
ATGGACCCTGGGAAGGACAAAGAGGGGGTGCCCCAGCCCTCAGGGCCGCCAGCAAGGAAGAAATTTGTGA
TACCCCTCGACGAGGATGAGGTCCCTCCTGGAGTGGCCAAGCCCTTATTCCGATCTACACAGAGCCTTCC
CACTGTGGACACCTCGGCCCAGGCGGCCCCTCAGACCTACGCCGAATATGCCATCTCACAGCCTCTGGAA
GGGGCTGGGGCCACGTGCCCCACAGGGTCAGAGCCCCTGGCAGGAGAGACGCCCAACCAGGCCCTGAAAC
CCGGGGCAAAATCCAACAGCATCATTGTGAGCCCTCGGCAGAGGGGCAATCCCGTACTGAAGTTCGTGCG
CAATGTGCCCTGGGAATTTGGCGACGTAATTCCCGACTATGTGCTGGGCCAGAGCACCTGTGCCCTGTTC
CTCAGCCTCCGCTACCACAACCTGCACCCAGACTACATCCATGGGCGGCTGCAGAGCCTGGGGAAGAACT
TCGCCTTGCGGGTCCTGCTTGTCCAGGTGGATGTGAAAGATCCCCAGCAGGCCCTCAAGGAGCTGGCTAA
GATGTGTATCCTGGCCGACTGCACATTGATCCTCGCCTGGAGCCCCGAGGAAGCTGGGCGGTACCTGGAG
ACCTACAAGGCCTATGAGCAGAAACCAGCGGACCTCCTGATGGAGAAGCTAGAGCAGGACTTCGTCTCCC
GGTCTCTGGAACAGCTCATCGCCGCATCAAGAGAAGATCTGGCCTTATGCCCAGGCCTGGGCCCTCAGAA
AGCCCGGAGGCTGTTTGATGTCCTGCACGAGCCCTTCTTGAAAGTACCCTGA

Translation (273 aa):
MDPGKDKEGVPQPSGPPARKKFVIPLDEDEVPPGVAKPLFRSTQSLPTVDTSAQAAPQTYAEYAISQPLE
GAGATCPTGSEPLAGETPNQALKPGAKSNSIIVSPRQRGNPVLKFVRNVPWEFGDVIPDYVLGQSTCALF
LSLRYHNLHPDYIHGRLQSLGKNFALRVLLVQVDVKDPQQALKELAKMCILADCTLILAWSPEEAGRYLE
TYKAYEQKPADLLMEKLEQDFVSRSLEQLIAASREDLALCPGLGPQKARRLFDVLHEPFLKVP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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