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Report for CCDS52246.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52246.1 Public Mus musculus 7 Ppfia3 23 108 98 CCDS HistoryNCBI Gene:76787Re-query CCDS DB by CCDS ID:52246.1Re-query CCDS DB by GeneID:76787See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52246.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000003961.15 ENSMUSP00000003961.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000003961.15Link to Ensembl Protein Viewer:ENSMUSP00000003961.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000003961Re-query CCDS DB by Protein ID:ENSMUSP00000003961
Original member Current member EBI ENSMUST00000211067.1 ENSMUSP00000148200.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000211067.1Link to Ensembl Protein Viewer:ENSMUSP00000148200.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000211067Re-query CCDS DB by Protein ID:ENSMUSP00000148200
Original member Current member NCBI NM_029741.2 NP_084017.2 Accepted alive Link to Nucleotide Sequence:NM_029741.2Link to Protein Sequence:NP_084017.2Re-query CCDS DB by Nucleotide ID:NM_029741Re-query CCDS DB by Protein ID:NP_084017Link to BLAST:NP_084017.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084017.2 1194 P60469-1 1194 100% 0 0

Chromosomal Locations for CCDS 52246.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 45340202 45340260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45340575 45340746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45340918 45340986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45341069 45341244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45341687 45341784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45342326 45342501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45343553 45343579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45343741 45343803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45346732 45346932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45347424 45347505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45347728 45347821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45348242 45348369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45348462 45348625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45350069 45350291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45352087 45352274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45353519 45353663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45354697 45354776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45354867 45354929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45355159 45355290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45356138 45356221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45356310 45356444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45356541 45356687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45357759 45357980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45358788 45358862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45359267 45359341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45360060 45360224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45360536 45360637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45361565 45361804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3585 nt):
ATGATGTGCGAGGTGATGCCTACCATCAGCGAGGATGGCCGGCGGGGCTCGGCGCTGGGCCCGGACGAGG
CCGGCGGCGAGCTGGAGCGCCTCATGGTCACGATGCTCACAGAGCGCGAGCGCCTGCTGGAGACGCTGCG
AGAGGCGCAGGACGGGTTGGCGACAGCGCAGCTACGACTGCGCGAGCTCGGCCACGAGAAGGACTCGCTG
CAGCGGCAGCTCAGCATCGCTCTGCCTCAGGAGTTTGCGGCTCTGACGAAGGAGCTTAACTTATGTCGGG
AACAGCTTCTGGAGAGGGAAGAAGAGATCGCAGAGCTGAAGGCGGAGCGAAACAACACCCGGCTCCTTCT
GGAACACCTTGAGTGCCTGGTGTCCAGGCACGAACGTTCCCTGCGAATGACTGTGGTGAAACGCCAAGCC
CAGTCCCCTGGAGGGGTCTCCTCTGAGGTGGAGGTGCTCAAGGCTCTAAAATCCCTCTTTGAACACCACA
AAGCCCTGGATGAGAAGGTCCGGGAAAGATTGCGGATGGCATTGGAGAGGGTAGCAGTGCTGGAGGAGGA
GCTGGAACTGAGCAATCAGGAGGCCCTGAACCTTCGAGACCAGCTATCTAGAAGGCGGTCAGGACTGGAG
GAGCCAGGCAAGGATGGGGATGGACAGACCCTTGCCAATGGCCTAGGTCCTGTTGGAGAATCCAACCGGC
GCACGGCCGAGCTGGAGGAAGCTCTGGAACGGCAGCGTGCAGAGGTGTGCCAGCTGCGGGAACGCCTGGC
GGTGCTGTGCCGTCAGATGAGCCAGCTGGAGGAGGAGCTGGGCACTGCTCACCGCGAGCTGGGTAAGGCC
GAGGAAGCTAACTCCAAGCTGCAGCGCGACCTCAAGGAGGCCCTGGCTCAGCGGGAAGATATGGAAGAAC
GCATCACCACACTGGAGAAGCGCTACCTGAGTGCCCAGCGTGAAGCCACATCTCTACATGATGCCAACGA
CAAGCTGGAGAATGAGTTGGCCAGCAAAGAGTCCCTGTACAGACAGAGTGAAGAGAAGAGCCGTCAGCTG
GCAGAGTGGCTGGATGACGCCAAGCAGAAGCTGCAACAGACCCTGCAGAAGGCCGAGACCTTACCAGAGA
TAGAGGCTCAGCTGGCGCAGCGCGTGGCTGCTCTGAACAAGGCTGAGGAACGCCATGGGAACTTTGAAGA
GAGGCTTCGGCAGCTGGAGGCACAGCTGGAGGAGAAGAACCAGGAGCTGCAGCGGGCCCGGCAGAGGGAG
AAAATGAACGATGACCACAATAAGCGACTGTCAGAGACGGTGGACAAGCTGCTAAGTGAATCCAACGAAC
GGTTACAGCTTCACCTCAAAGAACGTATGGGGGCACTAGAGGAGAAGAACTCACTGAGTGAGGAGATTGC
TAACATGAAGAAACTTCAAGATGAGCTGCTGCTGAATAAGGAGCAGCTCTTGGCTGAGATGGAACGGATG
CAGATGGAGATCGACCAGCTCCGGGGAAGGCCGCCCTCCTCCTATTCCAGGTCCCTTCCTGGCAGTGCCC
TGGAGCTCCGTTACTCCCAGGCACCAACCTTACCTTCTGGTGCCCCTCTGGATCCTTATGGGGCTGGCAG
TGGCCGGGCAGGCAAGAGGGGCCGCTGGTCGGGGGCCAAGGATGAGTCTTCCAAGGACTGGGATCGGTCT
GCCCCTGCTGGGTCCATCCCACCCCCGTTCCCTGGAGAGCTGGATGGCTCAGATGAAGAGGAGGCCGAGG
GGATGTTCGGGGCTGAGCTGCTGTCCCCCAGTGGGCAAGCTGATGTGCAGACGCTCGCTATCATGCTCCA
GGAGCAATTGGAAGCCATCAACAAGGAAATCAAGCTAATTCAAGAAGAGAAAGAGACGACAGAGCAGCGT
GCAGAAGAGCTGGAGAGCCGGGTGTCCAGTTCTGGCCTTGACTCGCTGGGCCGGTACCGAAGCAGCTGCT
CACTGCCACCCTCCCTCACCACCTCCACCCTCGCCAGCCCCTCACCTCCCAGCTCTGGCCATTCCACCCC
TCGTCTGGCACCCCCCAGTCCTGCCCGGGAGGGTACTGACAAGACCAACCATGTCTCTAAGGAGGAAGCT
GGAGTCCCACGAGGGGAGGGTCCAGCCGTTCCAGGAGACACCCCACCACCCACGCCCCGCTCTGCCCGTC
TTGAGAGGATGGCCCAGGCTTTGGCGCTGCAAGCAGGGTCACCGGAAGATGGAGCACCTCCCCGGGGAAG
TGAGAGCACCCCAGATTCCCTTCACAAAGCCCCCAAGAGGAAGAGCATCAAGTCGTCCATAGGCCGGCTC
TTCGGCAAGAAAGAGAAGGGCCGGATGGGACCCCCAGGCCGGGAGAGTGTTTCTCTGGCCGGGACACCCT
CAGATGAGACACTGGCCACTGACCCTCTGGGGCTAGCCAAGCTGACTGGTCCAGGAGATAAGGACAGGAG
GAACAAGAGGAAGCACGAACTTCTGGAAGAGGCCTGTCGCCAGGGCCTGCCTTTTGCTGCCTGGGATGGA
CCCACCGTGGTCTCCTGGCTGGAGCTCTGGGTGGGCATGCCGGCGTGGTACGTGGCCGCCTGCCGGGCCA
ATGTCAAGAGCGGCGCCATCATGGCCAACCTGTCAGACACGGAGATCCAGAGGGAGATCGGCATCAGCAA
TCCACTGCACAGGCTCAAGCTACGCCTCGCCATTCAGGAGATGGTGTCGCTCACATCACCCTCGGCTCCT
GCCTCCTCACGCACTCCCACAGGAAACGTGTGGATGACACACGAGGAGATGGAGTCTCTGACGGCAGCTA
CAAAACCCGAGACCAAGGAGATCAGCTGGGAGCAGATCCTGGCATATGGCGACATGAACCACGAGTGGGT
GGGGAACGACTGGCTGCCCAGCCTTGGGCTGCCCCAGTACCGAAGCTACTTCATGGAGTCGCTAGTTGAT
GCGCGGATGTTGGACCATTTGAACAAGAAGGAACTGCGAGGCCAACTCAAGATGGTGGACAGCTTCCACA
GGGTTAGTCTGCACTATGGTATTATGTGCCTGAAGCGGCTCAACTATGACCGGAAGGACCTGGAGCGGAG
GAGGGAAGAAAGCCAGACCCAAATCAGAGACGTGATGGTGTGGTCCAACGAACGGGTCATGGGTTGGGTG
TCTGGTCTTGGCCTGAAGGAATTTGCTACGAATCTCACGGAGAGTGGGGTGCACGGCGCACTGTTGGCTC
TGGATGAAACCTTCGACTACTCCGATCTGGCCTTGCTTCTACAGATACCTACGCAGAATGCACAAGCTCG
GCAACTGCTGGAGAAAGAATTCAGTAACCTCATCTCCTTAGGCACAGACAGACGGCTGGATGAGGACAGT
GCCAAGTCCTTCAGCCGCTCCCCATCCTGGAGGAAGATGTTCCGCGAGAAGGACCTCCGGGGTGTAACCC
CCGATTCAGCCGAGATGTTACCCCCCAACTTTCGCTCAGCTGCCGCAGGAGCCCTAGGCTCTCCCGGGCT
TCCTCTCCGCAAACTGCAGCCTGAAGGCCAGACTTCTGGGAGTTCGCGAGCAGATGGTGTTTCGGTCCGG
ACTTACTCCTGCTAG

Translation (1194 aa):
MMCEVMPTISEDGRRGSALGPDEAGGELERLMVTMLTERERLLETLREAQDGLATAQLRLRELGHEKDSL
QRQLSIALPQEFAALTKELNLCREQLLEREEEIAELKAERNNTRLLLEHLECLVSRHERSLRMTVVKRQA
QSPGGVSSEVEVLKALKSLFEHHKALDEKVRERLRMALERVAVLEEELELSNQEALNLRDQLSRRRSGLE
EPGKDGDGQTLANGLGPVGESNRRTAELEEALERQRAEVCQLRERLAVLCRQMSQLEEELGTAHRELGKA
EEANSKLQRDLKEALAQREDMEERITTLEKRYLSAQREATSLHDANDKLENELASKESLYRQSEEKSRQL
AEWLDDAKQKLQQTLQKAETLPEIEAQLAQRVAALNKAEERHGNFEERLRQLEAQLEEKNQELQRARQRE
KMNDDHNKRLSETVDKLLSESNERLQLHLKERMGALEEKNSLSEEIANMKKLQDELLLNKEQLLAEMERM
QMEIDQLRGRPPSSYSRSLPGSALELRYSQAPTLPSGAPLDPYGAGSGRAGKRGRWSGAKDESSKDWDRS
APAGSIPPPFPGELDGSDEEEAEGMFGAELLSPSGQADVQTLAIMLQEQLEAINKEIKLIQEEKETTEQR
AEELESRVSSSGLDSLGRYRSSCSLPPSLTTSTLASPSPPSSGHSTPRLAPPSPAREGTDKTNHVSKEEA
GVPRGEGPAVPGDTPPPTPRSARLERMAQALALQAGSPEDGAPPRGSESTPDSLHKAPKRKSIKSSIGRL
FGKKEKGRMGPPGRESVSLAGTPSDETLATDPLGLAKLTGPGDKDRRNKRKHELLEEACRQGLPFAAWDG
PTVVSWLELWVGMPAWYVAACRANVKSGAIMANLSDTEIQREIGISNPLHRLKLRLAIQEMVSLTSPSAP
ASSRTPTGNVWMTHEEMESLTAATKPETKEISWEQILAYGDMNHEWVGNDWLPSLGLPQYRSYFMESLVD
ARMLDHLNKKELRGQLKMVDSFHRVSLHYGIMCLKRLNYDRKDLERRREESQTQIRDVMVWSNERVMGWV
SGLGLKEFATNLTESGVHGALLALDETFDYSDLALLLQIPTQNAQARQLLEKEFSNLISLGTDRRLDEDS
AKSFSRSPSWRKMFREKDLRGVTPDSAEMLPPNFRSAAAGALGSPGLPLRKLQPEGQTSGSSRADGVSVR
TYSC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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