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Report for CCDS17079.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17079.1 Public Mus musculus 2 Zfp334 23 108 98 CCDS HistoryNCBI Gene:228876Re-query CCDS DB by CCDS ID:17079.1Re-query CCDS DB by GeneID:228876See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17079.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000103084.3 ENSMUSP00000099373.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103084.3Link to Ensembl Protein Viewer:ENSMUSP00000099373.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000103084Re-query CCDS DB by Protein ID:ENSMUSP00000099373
Original member Current member NCBI NM_178411.3 NP_848498.2 Accepted alive Link to Nucleotide Sequence:NM_178411.3Link to Protein Sequence:NP_848498.2Re-query CCDS DB by Nucleotide ID:NM_178411Re-query CCDS DB by Protein ID:NP_848498Link to BLAST:NP_848498.2

Chromosomal Locations for CCDS 17079.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 165380082 165381886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165382691 165382783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165383239 165383365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165386926 165386940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2040 nt):
ATGGACAGTACCCAGAGATCAATCTCCTTCAAGGACTTGGCTGTGGACTTCACCCGCGAGGAGTGGCAAC
GTCTGGGCCCTGCGCAGCGTCTCCTCTACAGGGATGTGATGCTGGAGACCTACAGTAACCTCATCGCGGT
GGGGCTTCATGTGAGCAAACCAGATGTGATCTTAAAACTGGAGCAAGGAAAAGAGCCCTGGGTAGTGGAA
AACTTGTCACGACAGAACCACGCAGAAGATGATGAGCCCTTAGAGAAGGACAAGAAAACACAAGACAAAC
ATTTGAAGCAGTTTTCAGTCGTCAATAGCAAACCAATGCTGGAAAAGGCCAATCTGTCTGAGAAAACAGT
TCCTCTCAACATGAATAGTGTTTCTTCGGGAAAAACACTCCATAAATATGACCCTGGCGGAAATGGCTTA
GAAAATAACTCAGAAAAAACCATTGCAAAGCCAAGCAAAGCCAATGGGAAAGTAGCTGCTGATCAGGATG
GGCGAGGAAAGCCAGCTCTGCACACCAAGGCTGACAGAAGTCACTCTGCGGCAAAACGGTACAGACGTAA
TGAAGTTAGGGATGTCAAGGGTCAAGGTGAGGGTCTCACTCAACAACAGAATACGCAGTCTGCAAGTCAG
CCCTCCGAGCATCGTGAAGGTGAACAGGAGTCAGCCGGCGCTGCGAGGTCGGAGGAGCAGCCTGAGCGGA
AGCGGAATGAATGCGCCGAGTGTAGGAAGACCTTTTCAAAGAGGTCCACTCTCATTGTCCACCTGAGAAT
CCATACCGGAGAAAGACCCTACGCCTGCAATTACTGTAGGAAAACTTTCCGTATAAAGGCAAGCCTCACT
CGACACCAGCGGATTCACACCGGAGAGAGGCCTTACAAGTGCAAGGAGTGTGGCAAAGCCTTCATCGACA
AGTCTGCCCTCATCGTGCATCAGAGGATTCACGGAGGGGAGAAGTCCTACGAGTGTAACGAGTGTGGCAA
GACCTTCTTCCGGAAGTCAGCCCTGGCTGAGCACTTCCGGTCCCACACCGGGGAGAAGCCTTACAAATGC
AAGGAGTGTGGCAACGCCTTTGGCAAGAAGTCGTACCTCATCGTGCACCAAAGAACTCACCGGGGCGAGA
AGCCCAACGAGTGTAAGGAGTGTGGGAAGACCTTCTTCTGTCTGTCCGCCCTGACAGCACACCAGAGGAT
CCACACGGGGGAGAAGCCCTACGAGTGCAAGGAGTGTGATAAGACCTTCTTCTGTCAGTCGGCCCTCAAC
GTGCATCTGAGAAGTCACACCGGCGAGAAGCCCTACAAGTGCCGCCTGTGTGGGAAGTATCTGTGCACCA
AGTCTGCCCTGGTGGCGCATCAGGTCATTCACAGAGGGAAGAAGACCTTCGAGTGTCCCGAGTGTGGGAA
GCTTTTCTACCTGAAGTCCACGCTCACCATCCATCAGAGAACCCACACAGGAGAGAAGCATGGCTTGCTT
AGTAAGTGGAGCCGAGCATCCGCTGCGAAGCCCAACTGCAGCGAGCAGAAGAGGGCGGACGCCAAGGACA
ACGTGCACGAGTGTCACGACCACAAGCGGCCAGCCCACAAGAGCTCCCGCCGCTTCGCGCACAAGAGAAC
CATATGGGAGAGGCCTTACGAGTGTGAGGAGTGTGGGCGGACCTACTGCAGGAAGTCAGCTCTCAGGCAC
CACCAGAAGACGCACACGGGCGAGCGGCCCTACGAGTGCAAGGAGTGTGGGAAGACCTTCTGCCAAAAGG
TCTCCTTCACGGAGCACCAGCGGACTCACACCGGCGAGAAGCCGCACAAGTGCAAGGAGTGTGGGAAGTC
CTTCCGCCACAAGTCGGCCTTCACCGTGCACAAGAGGATCCACACCGGGGAGAAACCGTACGCCTGCAAC
GAATGTGGCAAGAGCTACCGCCGCCTCTGGACGCTGACTGAACACCAGAAAATACACACGGGCGAGAAAC
CCTACGAATGTAACCTGTGTAAGAAGTCATTTCGCCACAAATCAAACTTCCTCTTACATCAGAAAACTCA
CAAGAAGTAA

Translation (679 aa):
MDSTQRSISFKDLAVDFTREEWQRLGPAQRLLYRDVMLETYSNLIAVGLHVSKPDVILKLEQGKEPWVVE
NLSRQNHAEDDEPLEKDKKTQDKHLKQFSVVNSKPMLEKANLSEKTVPLNMNSVSSGKTLHKYDPGGNGL
ENNSEKTIAKPSKANGKVAADQDGRGKPALHTKADRSHSAAKRYRRNEVRDVKGQGEGLTQQQNTQSASQ
PSEHREGEQESAGAARSEEQPERKRNECAECRKTFSKRSTLIVHLRIHTGERPYACNYCRKTFRIKASLT
RHQRIHTGERPYKCKECGKAFIDKSALIVHQRIHGGEKSYECNECGKTFFRKSALAEHFRSHTGEKPYKC
KECGNAFGKKSYLIVHQRTHRGEKPNECKECGKTFFCLSALTAHQRIHTGEKPYECKECDKTFFCQSALN
VHLRSHTGEKPYKCRLCGKYLCTKSALVAHQVIHRGKKTFECPECGKLFYLKSTLTIHQRTHTGEKHGLL
SKWSRASAAKPNCSEQKRADAKDNVHECHDHKRPAHKSSRRFAHKRTIWERPYECEECGRTYCRKSALRH
HQKTHTGERPYECKECGKTFCQKVSFTEHQRTHTGEKPHKCKECGKSFRHKSAFTVHKRIHTGEKPYACN
ECGKSYRRLWTLTEHQKIHTGEKPYECNLCKKSFRHKSNFLLHQKTHKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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