NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS39951.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39951.1 Public Mus musculus 7 Kcna7 23 108 98 CCDS HistoryNCBI Gene:16495Re-query CCDS DB by CCDS ID:39951.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39951.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107774.2 ENSMUSP00000103403.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107774.2Link to Ensembl Protein Viewer:ENSMUSP00000103403.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107774Re-query CCDS DB by Protein ID:ENSMUSP00000103403
Original member Current member NCBI NM_010596.2 NP_034726.2 Accepted alive Link to Nucleotide Sequence:NM_010596.2Link to Protein Sequence:NP_034726.2Re-query CCDS DB by Nucleotide ID:NM_010596Re-query CCDS DB by Protein ID:NP_034726Link to BLAST:NP_034726.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034726.2 489 Q17ST2-1 489 100% 0 0

Chromosomal Locations for CCDS 39951.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 45406362 45407015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45408945 45409760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1470 nt):
ATGCTATTTTTACCCGCCGACACCGGACACCCGACTGGGGTGGCTGCGGCGTCGGGGCCACACGTCCGTT
CACCGGTCGCCCGGGCTGTGCGCGCCATGGAGCCACGGTGCCCGCCGCCCTGCGGCTGCTGCGAGCGGCT
GGTGCTCAACGTGGCCGGGTTGCGCTTCGAGACCCGCGCGCGCACGCTCGGCCGCTTCCCGGACACGCTG
CTGGGGGACCCGGTGCGCCGCAGCCGCTTCTACGACGGCGCGCGCCGCGAGTATTTCTTCGACCGACACC
GGCCCAGCTTCGATGCGGTGCTCTACTACTACCAGTCGGGCGGCCGGCTGAGACGGCCGGCGCACGTGCC
CCTCGACGTCTTCCTGGAGGAGGTGTCCTTCTACGGGCTGGGCGCGGCGGCGCTGGCGCGGCTGCGGGAG
GACGAGGGCTGCGCGGTGCCGCCCGAGCGGCCGCTGCCCCGCCGCGCCTTTGCGCGTCAGCTCTGGCTGC
TCTTCGAATTTCCTGAGAGCTCGCAGGCTGCGCGCGTGCTCGCCGTGGTCTCCGTACTCGTCATCCTGGT
CTCCATCGTGGTCTTTTGCCTCGAGACACTGCCAGACTTCCGCGACGACCGCGATGACCCGGGGCTCGCG
CCCGTAGCCGCTGCTACTGGCCCGTTCCTCGCCCGACTGAATGGCTCCAGTCCCATGCCAGGAGCCCCTC
CCCGACAGCCCTTCAACGATCCATTCTTTGTGGTGGAGACCCTGTGTATCTGCTGGTTCTCCTTTGAGCT
GCTGGTGCGTCTGGTGGCCTGCCCTAGCAAAGCTGTGTTCTTCAAGAATGTGATGAACCTAATTGACTTC
GTGGCCATCCTGCCTTACTTCGTGGCCCTGGGCACGGAGTTAGCCCGGCAGCGGGGTGTGGGCCAGCCGG
CTATGTCCCTGGCCATCCTAAGGGTCATCCGATTGGTGCGTGTCTTCCGCATCTTCAAGCTCTCCAGGCA
TTCGAAGGGTCTACAGATCTTGGGTCAGACACTGCGGGCTTCCATGCGTGAGCTAGGTCTCCTCATCTTC
TTCCTCTTCATTGGCGTGGTCCTCTTTTCCAGCGCAGTCTACTTTGCTGAAGTGGACCGGGTGGACACCC
ATTTCACCAGCATCCCGGAGTCCTTTTGGTGGGCAGTGGTCACCATGACCACGGTTGGCTATGGGGACAT
GGCACCCGTCACCGTGGGTGGCAAGATCGTGGGCTCTCTGTGTGCCATTGCAGGTGTGCTCACCATCTCT
CTGCCTGTGCCTGTCATTGTCTCTAACTTTAGCTACTTTTACCACCGGGAGACAGAGGGCGAAGAGGCAG
GGATGTACAGCCATGTGGACACACAGCCCTGCGGTACCCTGGAGGGCAAGGCTAATGGGGGGCTGGTGGA
CTCTGAGGTGCCTGAACTCCTCCCACCACTCTGGCCCCCTGCAGGGAAACACATGGTGACTGAGGTGTGA

Translation (489 aa):
MLFLPADTGHPTGVAAASGPHVRSPVARAVRAMEPRCPPPCGCCERLVLNVAGLRFETRARTLGRFPDTL
LGDPVRRSRFYDGARREYFFDRHRPSFDAVLYYYQSGGRLRRPAHVPLDVFLEEVSFYGLGAAALARLRE
DEGCAVPPERPLPRRAFARQLWLLFEFPESSQAARVLAVVSVLVILVSIVVFCLETLPDFRDDRDDPGLA
PVAAATGPFLARLNGSSPMPGAPPRQPFNDPFFVVETLCICWFSFELLVRLVACPSKAVFFKNVMNLIDF
VAILPYFVALGTELARQRGVGQPAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLRASMRELGLLIF
FLFIGVVLFSSAVYFAEVDRVDTHFTSIPESFWWAVVTMTTVGYGDMAPVTVGGKIVGSLCAIAGVLTIS
LPVPVIVSNFSYFYHRETEGEEAGMYSHVDTQPCGTLEGKANGGLVDSEVPELLPPLWPPAGKHMVTEV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH