NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS13738.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13738.1 Public Homo sapiens 22 CCT8L2 24 110 108 CCDS HistoryNCBI Gene:150160Re-query CCDS DB by CCDS ID:13738.1Re-query CCDS DB by GeneID:150160See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13738.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000359963.4 ENSP00000353048.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000359963.4Link to Ensembl Protein Viewer:ENSP00000353048.3Re-query CCDS DB by Nucleotide ID:ENST00000359963Re-query CCDS DB by Protein ID:ENSP00000353048
Original member Current member NCBI NM_014406.5 NP_055221.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014406.5Link to Protein Sequence:NP_055221.1Re-query CCDS DB by Nucleotide ID:NM_014406Re-query CCDS DB by Protein ID:NP_055221Link to BLAST:NP_055221.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055221.1 557 Q96SF2 557 100% 0 0

Chromosomal Locations for CCDS 13738.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 16590877 16592550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1674 nt):
ATGGACAGCACAGTCCCTTCAGCCCTGGAGCTGCCCCAGCGGCTGGCACTGAACCCAAGGGAGAGCCCGA
GG
AGTCCAGAAGAGGAGGAGCCCCACCTGCTGAGCAGCTTGGCTGCAGTCCAGACCCTGGCCAGTGTCAT
C
CGGCCTTGCTATGGCCCCCACGGCCGGCAGAAGTTCCTGGTGACCATGAAAGGAGAAACAGTGTGCACG
GGG
TGTGCCACTGCCATCCTCAGGGCCCTGGAGCTGGAGCACCCAGCAGCATGGCTCCTCCGGGAAGCAG
GA
CAAACCCAGGCAGAGAATAGTGGGGACGGCACAGCCTTCGTGGTTCTGCTGACGGAAGCCTTGCTGGA
A
CAGGCAGAGCAGCTGCTGAAGGCTGGCCTGCCTCGCCCGCAGCTCCGGGAGGCCTACGCCACGGCCACT
GCA
GAGGTCCTGGCCACACTGCCCTCCCTGGCCATCCAATCTCTGGGGCCTTTGGAAGATCCATCCTGGG
CC
CTCCATTCTGTGATGAATACCCACACCCTGTCCCCCATGGACCACTTGACCAAGCTGGTGGCCCACGC
C
TGCTGGGCTATCAAGGAACTAGACGGCAGCTTCAAGCCTGAGCGTGTTGGGGTGTGCGCGCTGCCCGGG
GGG
ACACTGGAGGATTCCTGCCTCCTCCCGGGGTTAGCAATATCTGGGAAGCTCTGTGGGCAAATGGCCA
CA
GTGTTAAGTGGTGCCAGGGTGGCTCTCTTTGCTTGCCCCTTTGGTCCTGCCCATCCAAATGCACCAGC
A
ACGGCCCGTCTTTCTAGTCCTGCTGATCTAGCTCAATTTAGTAAAGGAAGCGATCAATTACTAGAAAAG
CAA
GTAGGCCAGCTAGCAGCTGCAGGAATTAATGTGGCAGTGGTGTTGGGGGAGGTCGACGAGGAGACCC
TC
ACACTGGCGGACAAGTATGGCATCGTGGTGATTCAAGCTAGGTCTTGGATGGAGATCATTTACCTGAG
T
GAGGTGTTGGACACACCTCTGCTGCCTCGTCTGCTCCCTCCCCAGAGGCCAGGCAAGTGCCAGAGGGTT
TAC
AGGCAGGAGCTGGGAGATGGTTTGGCTGTGGTATTTGAATGGGAATGTACAGGCACACCTGCCCTCA
CT
GTGGTTCTCAGGGGAGCCACCACCCAGGGGCTGCGGAGTGCAGAGCAGGCCGTCTACCACGGCATTGA
T
GCCTATTTCCAGCTATGTCAAGATCCCAGACTGATTCCAGGAGCTGGGGCCACAGAAATGGCTTTGGCA
AAA
ATGCTTTCTGATAAAGGAAGCAGATTGGAAGGGCCCAGTGGGCCTGCATTCCTAGCATTTGCCTGGG
CC
CTGAAGTATCTTCCTAAAACTTTGGCAGAGAATGCAGGCTTAGCTGTCTCAGACGTGATGGCAGAAAT
G
AGTGGAGTGCACCAAGGTGGGAACCTCCTAATGGGTGTGGGAACTGAAGGGATAATAAATGTGGCCCAG
GAA
GGGGTGTGGGACACCCTAATAGTCAAAGCCCAAGGATTTCGAGCAGTGGCTGAGGTGGTGCTACAGC
TC
GTGACTGTAGATGAAATCGTAGTGGCCAAGAAAAGTCCCACACATCAGGAGATCTGGAATCCTGACTC
T
AAGAAGACAAAGAAACACCCACCTCCTGTGGAAACAAAAAAAATCCTTGGATTGAATAACTAG


Translation (557 aa):
MDSTVPSALELPQRLALNPRESPRSPEEEEPHLLSSLAAVQTLASVIRPCYGPHGRQKFLVTMKGETVCT
G
CATAILRALELEHPAAWLLREAGQTQAENSGDGTAFVVLLTEALLEQAEQLLKAGLPRPQLREAYATAT
A
EVLATLPSLAIQSLGPLEDPSWALHSVMNTHTLSPMDHLTKLVAHACWAIKELDGSFKPERVGVCALPG
G
TLEDSCLLPGLAISGKLCGQMATVLSGARVALFACPFGPAHPNAPATARLSSPADLAQFSKGSDQLLEK
Q
VGQLAAAGINVAVVLGEVDEETLTLADKYGIVVIQARSWMEIIYLSEVLDTPLLPRLLPPQRPGKCQRV
Y
RQELGDGLAVVFEWECTGTPALTVVLRGATTQGLRSAEQAVYHGIDAYFQLCQDPRLIPGAGATEMALA
K
MLSDKGSRLEGPSGPAFLAFAWALKYLPKTLAENAGLAVSDVMAEMSGVHQGGNLLMGVGTEGIINVAQ
E
GVWDTLIVKAQGFRAVAEVVLQLVTVDEIVVAKKSPTHQEIWNPDSKKTKKHPPPVETKKILGLNN




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser