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Report for CCDS7170.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7170.1 Public Homo sapiens 10 ARHGAP12 24 110 108 CCDS HistoryNCBI Gene:94134Re-query CCDS DB by CCDS ID:7170.1Re-query CCDS DB by GeneID:94134See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7170.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000344936.7 ENSP00000345808.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000344936.7Link to Ensembl Protein Viewer:ENSP00000345808.2Re-query CCDS DB by Nucleotide ID:ENST00000344936Re-query CCDS DB by Protein ID:ENSP00000345808
Original member Current member NCBI NM_018287.7 NP_060757.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018287.7Link to Protein Sequence:NP_060757.4Re-query CCDS DB by Nucleotide ID:NM_018287Re-query CCDS DB by Protein ID:NP_060757Link to BLAST:NP_060757.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060757.4 846 Q8IWW6-1 846 100% 0 0

Chromosomal Locations for CCDS 7170.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 31807658 31807832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 31808649 31808751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 31808994 31809128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 31809230 31809307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 31810649 31810747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 31812707 31812823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 31814259 31814361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 31817788 31817886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 31820387 31820488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 31826304 31826385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 31831739 31831800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 31839305 31839319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 31839637 31839711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 31843461 31843586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 31852517 31852597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 31854066 31854206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 31861395 31861658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 31908172 31908855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2541 nt):
ATGAAAATGGCTGACAGAAGTGGGAAGATTATTCCAGGACAAGTGTATATTGAGGTGGAATATGATTATG
AATATGAAGCAAAGGACAGAAAGATTGTGATAAAACAAGGGGAGAGGTACATCTTGGTGAAAAAGACCAA
TGATGACTGGTGGCAAGTCAAGCCAGATGAAAACTCCAAAGCGTTTTATGTGCCAGCCCAGTATGTGAAG
GAGGTCACGCGCAAAGCTCTCATGCCACCTGTTAAGCAGGTAGCTGGTCTGCCAAATAACTCCACGAAAA
TAATGCAGAGTTTGCATCTTCAGAGATCAACAGAAAATGTGAACAAATTGCCTGAGCTTTCAAGTTTCGG
AAAGCCATCGTCATCTGTTCAAGGAACAGGTCTTATTCGTGATGCCAATCAGAATTTTGGACCCAGTTAT
AATCAAGGTCAGACTGTCAACCTAAGCCTGGACCTGACCCATAATAACGGAAAGTTTAACAATGACTCAC
ATTCTCCTAAAGTTTCCAGCCAGAATAGGACACGCTCATTTGGTCATTTTCCCGGTCCAGAGTTCTTGGA
TGTAGAGAAAACTAGCTTCTCCCAGGAACAATCTTGTGATTCCGCAGGAGAAGGCTCTGAAAGAATACAT
CAAGATTCTGAATCTGGTGATGAACTTAGCAGCAGCTCCACTGAACAGATAAGGGCAACCACACCTCCAA
ATCAAGGAAGGCCAGATTCTCCTGTCTATGCTAACCTTCAAGAACTGAAAATATCCCAGTCTGCTCTTCC
CCCACTTCCTGGGAGCCCGGCAATTCAGATTAATGGAGAATGGGAAACTCATAAAGACAGCTCAGGGCGT
TGCTATTACTATAACAGAGGGACACAGGAAAGAACTTGGAAACCTCCTCGTTGGACTCGGGATGCAAGCA
TCAGCAAAGGAGATTTCCAAAATCCAGGGGATCAAGAGCTTCTTTCATCGGAAGAAAACTACTACAGCAC
TTCTTACAGCCAGTCAGATAGTCAGTGTGGTTCTCCTCCAAGGGGTTGGTCAGAAGAGTTGGATGAACGT
GGGCATACCTTATATACCAGTGACTATACTAATGAAAAGTGGCTCAAGCATGTTGATGATCAAGGTAGAC
AATATTACTACAGTGCAGACGGATCTCGGTCAGAATGGGAATTGCCAAAGTATAATGCTTCATCCCAGCA
GCAAAGAGAAATAATTAAAAGTAGGAGCCTGGACAGGCGGCTGCAAGAACCAATAGTATTAACAAAGTGG
AGACATAGCACCATTGTATTGGACACTAATGATAAGGAATCTCCAACTGCCTCAAAACCCTGCTTTCCTG
AAAATGAGTCTTCTCCCTCCTCACCAAAGCACCAAGATACAGCCAGCAGTCCAAAGGATCAAGAGAAATA
TGGATTATTAAATGTAACAAAAATTGCTGAAAATGGGAAAAAGGTTCGAAAGAACTGGTTGTCTTCTTGG
GCGGTGTTGCAGGGTTCATCTTTACTTTTTACCAAAACTCAAGGAAGTAGCACAAGTTGGTTTGGCAGTA
ATCAGTCCAAACCAGAGTTCACAGTGGACCTCAAGGGGGCAACAATTGAGATGGCTTCAAAGGATAAATC
CAGCAAAAAGAATGTATTTGAGCTGAAAACTCGTCAAGGAACAGAACTGCTAATTCAGTCTGACAATGAC
ACTGTTATTAATGATTGGTTTAAAGTTCTTAGTAGTACAATCAATAATCAGGCAGTAGAAACTGATGAAG
GAATTGAAGAGGAGATACCGGATTCACCAGGAATAGAAAAGCATGATAAAGAAAAGGAACAAAAGGATCC
CAAAAAGCTTCGTTCCTTTAAAGTATCTAGCATAGATTCTTCAGAACAGAAAAAAACCAAGAAAAACTTA
AAGAAGTTTCTTACACGACGCCCCACTTTGCAAGCTGTTCGTGAAAAAGGTTATATTAAAGATCAGGTAT
TTGGATCCAATCTCGCTAATCTGTGTCAGAGAGAGAATGGCACAGTACCAAAGTTTGTGAAGTTATGTAT
TGAACATGTTGAAGAACATGGTTTGGATATTGATGGGATATACAGAGTAAGTGGCAACCTCGCAGTGATC
CAGAAACTAAGGTTTGCAGTCAATCATGATGAGAAATTGGACTTGAATGACAGTAAATGGGAAGATATTC
ATGTCATTACTGGAGCCCTCAAAATGTTTTTTCGAGAATTACCAGAACCTCTTTTTACATTTAATCATTT
TAATGATTTTGTTAATGCAATTAAGCAAGAACCAAGACAGCGAGTCGCTGCTGTTAAGGACCTAATCAGA
CAGTTGCCAAAGCCAAACCAAGACACAATGCAGATTCTTTTCCGACATCTCAGAAGAGTTATAGAAAATG
GAGAGAAAAATCGAATGACCTATCAGAGTATAGCAATTGTTTTTGGTCCCACTCTATTAAAACCAGAAAA
AGAGACTGGTAATATAGCAGTTCATACTGTGTACCAGAATCAGATTGTAGAATTAATTCTTCTGGAACTG
AGTTCCATCTTCGGACGTTGA

Translation (846 aa):
MKMADRSGKIIPGQVYIEVEYDYEYEAKDRKIVIKQGERYILVKKTNDDWWQVKPDENSKAFYVPAQYVK
EVTRKALMPPVKQVAGLPNNSTKIMQSLHLQRSTENVNKLPELSSFGKPSSSVQGTGLIRDANQNFGPSY
NQGQTVNLSLDLTHNNGKFNNDSHSPKVSSQNRTRSFGHFPGPEFLDVEKTSFSQEQSCDSAGEGSERIH
QDSESGDELSSSSTEQIRATTPPNQGRPDSPVYANLQELKISQSALPPLPGSPAIQINGEWETHKDSSGR
CYYYNRGTQERTWKPPRWTRDASISKGDFQNPGDQELLSSEENYYSTSYSQSDSQCGSPPRGWSEELDER
GHTLYTSDYTNEKWLKHVDDQGRQYYYSADGSRSEWELPKYNASSQQQREIIKSRSLDRRLQEPIVLTKW
RHSTIVLDTNDKESPTASKPCFPENESSPSSPKHQDTASSPKDQEKYGLLNVTKIAENGKKVRKNWLSSW
AVLQGSSLLFTKTQGSSTSWFGSNQSKPEFTVDLKGATIEMASKDKSSKKNVFELKTRQGTELLIQSDND
TVINDWFKVLSSTINNQAVETDEGIEEEIPDSPGIEKHDKEKEQKDPKKLRSFKVSSIDSSEQKKTKKNL
KKFLTRRPTLQAVREKGYIKDQVFGSNLANLCQRENGTVPKFVKLCIEHVEEHGLDIDGIYRVSGNLAVI
QKLRFAVNHDEKLDLNDSKWEDIHVITGALKMFFRELPEPLFTFNHFNDFVNAIKQEPRQRVAAVKDLIR
QLPKPNQDTMQILFRHLRRVIENGEKNRMTYQSIAIVFGPTLLKPEKETGNIAVHTVYQNQIVELILLEL
SSIFGR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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