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Report for CCDS43906.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43906.1 Public Homo sapiens 9 CCDC183 24 110 108 CCDS HistoryNCBI Gene:84960Re-query CCDS DB by CCDS ID:43906.1Re-query CCDS DB by GeneID:84960See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43906.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000338005.7 ENSP00000338013.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000338005.7Link to Ensembl Protein Viewer:ENSP00000338013.6Re-query CCDS DB by Nucleotide ID:ENST00000338005Re-query CCDS DB by Protein ID:ENSP00000338013
Original member Current member NCBI NM_001039374.5 NP_001034463.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001039374.5Link to Protein Sequence:NP_001034463.4Re-query CCDS DB by Nucleotide ID:NM_001039374Re-query CCDS DB by Protein ID:NP_001034463Link to BLAST:NP_001034463.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001034463.4 534 Q5T5S1-1 534 100% 0 0

Chromosomal Locations for CCDS 43906.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 136796398 136796467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 136799102 136799223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 136799713 136799790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 136800002 136800169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 136800389 136800493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 136802664 136802786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 136804502 136804627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 136804762 136804816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 136805357 136805457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 136806078 136806238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 136806504 136806672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 136806757 136806867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 136806970 136807066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 136807572 136807690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1605 nt):
ATGAGGAGGCACAGTGAGACAGATGTGGAAGAGCAGACCCAGGAGCTGAAGACCATCACTCAGCTCCAGG
AGCAGTGTCGGGCACTCCAGATCCAAGGGGTGAAAGAGAATATGGACCAGAACAAGGCCACGCTGGCCCT
CCTGCGCAGCAACATCCGCCGCGGGGCCCAGGACTGGGCTTTGGCCAAGAAGTATGACCAGTGGACCATC
TCCAAGGCCTGCGGGAAAAACTTGCCTTTGCGACTGGCGCACTGCCGCAGCACCATGGAGGTGGTGCGGG
AGAAGCTGCGCAAGTACGTCTTCGACCGCGTGAACATGCACAACCTACTGATCCACCTGGTGCGGCGGCG
CGGGCAGAAGCTGGAGAGCATGCAGCTGGAGCTGGACAGCCTGCGGAGCCAGCCCGACGCCAGCAAGGAG
GAGCTGCGGCTGCTGCAGATCATCCGCCAGCTGGAGAACAACATCGAGAAGACAATGATCAAGATCATCA
CCAGCCAGAACATCCACCTGCTGTATTTGGACCTGCTGGATTATCTGAAGACAGTGCTGGCAGGATACCC
CATTGAGCTGGACAAGCTGCAGAACCTCGTGGTCAACTACTGCTCAGAGCTGTCGGATATGAAGATCATG
TCCCAAGATGCCATGATGATCACGGATGAGGTCAAGAGGAACATGAGGCAAAGGGAGGCGTCCTTCATCG
AGGAGCGCCGGGCAAGGGAGAACCGGCTCAACCAGCAGAAGAAGCTGATCGACAAGATCCACACGAAGGA
GACCAGCGAGAAGTACCGCCGGGGCCAGATGGACTTGGACTTCCCCTCGAACCTGATGAGCACGGAGACC
CTGAAATTGAGGAGAAAAGAGACCTCCACAGCAGAAATGGAATACCAGTCGGGCGTGACTGCTGTGGTGG
AGAAGGTCAAGAGTGCTGTACGGTGCTCTCACGTCTGGGACATCACTAGCCGCTTCCTGGCCCAGAGGAA
CACGGAGGAGAACCTGGAGCTGCAGATGGAGGACTGTGAGGAGTGGCGGGTGCAGCTGAAGGCCCTGGTG
AAGCAGCTGGAGCTGGAGGAGGCCGTGCTCAAGTTCCGCCAGAAGCCTAGCTCCATCAGCTTCAAGTCCG
TTGAGAAGAAAATGACAGACATGCTAAAAGAGGAAGAAGAGAGGCTCCAGCTGGCGCACAGCAACATGAC
CAAGGGCCAGGAGCTGCTGCTGACCATCCAGATGGGCATCGACAACCTCTATGTCCGGCTGATGGGCATT
AACTTGCCTGCGACCCAGAGAGAAGTGGTGCTCTCCAACACCCTCGATTTGAACAGCAAGCTGGCGTACT
GCGAGGGGAAGCTCACGTACCTGGCTGACAGAGTGCAGATGGTGTCCAGGACCGAGGAGGGCGACACAAA
GGTGAGGGACACCCTGGAGTCCTCGACTCTGATGGAGAAGTACAACACCAGGATCAGCTTTGAGAACCGG
GAGGAGGATATGATCGACACCTTCCAGTTCCCCGACATGGACCACAGCTACGTCCCTTCGCGCGCCGAGA
TCAAGAGGCAGGCGCAGCGGCTAATCGAGGGGAAGCTCAAGGCGGCCAAGAAAAAGAAGAAGTAG

Translation (534 aa):
MRRHSETDVEEQTQELKTITQLQEQCRALQIQGVKENMDQNKATLALLRSNIRRGAQDWALAKKYDQWTI
SKACGKNLPLRLAHCRSTMEVVREKLRKYVFDRVNMHNLLIHLVRRRGQKLESMQLELDSLRSQPDASKE
ELRLLQIIRQLENNIEKTMIKIITSQNIHLLYLDLLDYLKTVLAGYPIELDKLQNLVVNYCSELSDMKIM
SQDAMMITDEVKRNMRQREASFIEERRARENRLNQQKKLIDKIHTKETSEKYRRGQMDLDFPSNLMSTET
LKLRRKETSTAEMEYQSGVTAVVEKVKSAVRCSHVWDITSRFLAQRNTEENLELQMEDCEEWRVQLKALV
KQLELEEAVLKFRQKPSSISFKSVEKKMTDMLKEEEERLQLAHSNMTKGQELLLTIQMGIDNLYVRLMGI
NLPATQREVVLSNTLDLNSKLAYCEGKLTYLADRVQMVSRTEEGDTKVRDTLESSTLMEKYNTRISFENR
EEDMIDTFQFPDMDHSYVPSRAEIKRQAQRLIEGKLKAAKKKKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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