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Report for CCDS41540.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41540.1 Public Homo sapiens 10 SFTPA2 24 110 108 CCDS HistoryNCBI Gene:729238Re-query CCDS DB by CCDS ID:41540.1Re-query CCDS DB by GeneID:729238See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41540.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000372325.7 ENSP00000361400.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000372325.7Link to Ensembl Protein Viewer:ENSP00000361400.2Re-query CCDS DB by Nucleotide ID:ENST00000372325Re-query CCDS DB by Protein ID:ENSP00000361400
Original member Current member EBI ENST00000372327.9 ENSP00000361402.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000372327.9Link to Ensembl Protein Viewer:ENSP00000361402.5Re-query CCDS DB by Nucleotide ID:ENST00000372327Re-query CCDS DB by Protein ID:ENSP00000361402
Original member Current member NCBI NM_001098668.4 NP_001092138.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001098668.4Link to Protein Sequence:NP_001092138.1Re-query CCDS DB by Nucleotide ID:NM_001098668Re-query CCDS DB by Protein ID:NP_001092138Link to BLAST:NP_001092138.1
Original member Current member NCBI NM_001320813.2 NP_001307742.1 Accepted alive Link to Nucleotide Sequence:NM_001320813.2Link to Protein Sequence:NP_001307742.1Re-query CCDS DB by Nucleotide ID:NM_001320813Re-query CCDS DB by Protein ID:NP_001307742Link to BLAST:NP_001307742.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001092138.1 248 Q8IWL1 248 100% 0 0
NP_001307742.1 248 Q8IWL1 248 100% 0 0

Chromosomal Locations for CCDS 41540.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 79557209 79557585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79558052 79558129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79558886 79559005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79559312 79559483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (747 nt):
ATGTGGCTGTGCCCTCTGGCCCTCACCCTCATCTTGATGGCAGCCTCTGGTGCTGCGTGCGAAGTGAAGG
ACGTTTGTGTTGGAAGCCCTGGTATCCCCGGCACTCCTGGATCCCACGGCCTGCCAGGCAGGGACGGGAG
AGATGGTGTCAAAGGAGACCCTGGCCCTCCAGGCCCCATGGGTCCGCCTGGAGAAACACCATGTCCTCCT
GGGAATAATGGGCTGCCTGGAGCCCCTGGTGTCCCTGGAGAGCGTGGAGAGAAGGGGGAGGCTGGCGAGA
GAGGCCCTCCAGGGCTTCCAGCTCATCTAGATGAGGAGCTCCAAGCCACACTCCACGACTTCAGACATCA
AATCCTGCAGACAAGGGGAGCCCTCAGTCTGCAGGGCTCCATAATGACAGTAGGAGAGAAGGTCTTCTCC
AGCAATGGGCAGTCCATCACTTTTGATGCCATTCAGGAGGCATGTGCCAGAGCAGGCGGCCGCATTGCTG
TCCCAAGGAATCCAGAGGAAAATGAGGCCATTGCAAGCTTCGTGAAGAAGTACAACACATATGCCTATGT
AGGCCTGACTGAGGGTCCCAGCCCTGGAGACTTCCGCTACTCAGATGGGACCCCTGTAAACTACACCAAC
TGGTACCGAGGGGAGCCTGCAGGTCGGGGAAAAGAGCAGTGTGTGGAGATGTACACAGATGGGCAGTGGA
ATGACAGGAACTGCCTGTACTCCCGACTGACCATCTGTGAGTTCTGA

Translation (248 aa):
MWLCPLALTLILMAASGAACEVKDVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPP
GNNGLPGAPGVPGERGEKGEAGERGPPGLPAHLDEELQATLHDFRHQILQTRGALSLQGSIMTVGEKVFS
SNGQSITFDAIQEACARAGGRIAVPRNPEENEAIASFVKKYNTYAYVGLTEGPSPGDFRYSDGTPVNYTN
WYRGEPAGRGKEQCVEMYTDGQWNDRNCLYSRLTICEF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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