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Report for CCDS12340.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12340.1 Public Homo sapiens 19 CIB3 24 110 108 CCDS HistoryNCBI Gene:117286Re-query CCDS DB by CCDS ID:12340.1Re-query CCDS DB by GeneID:117286See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12340.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000269878.8 ENSP00000269878.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000269878.8Link to Ensembl Protein Viewer:ENSP00000269878.3Re-query CCDS DB by Nucleotide ID:ENST00000269878Re-query CCDS DB by Protein ID:ENSP00000269878
Original member Current member NCBI NM_054113.4 NP_473454.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_054113.4Link to Protein Sequence:NP_473454.1Re-query CCDS DB by Nucleotide ID:NM_054113Re-query CCDS DB by Protein ID:NP_473454Link to BLAST:NP_473454.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_473454.1 187 Q96Q77-1 187 100% 0 0

Chromosomal Locations for CCDS 12340.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 16161465 16161486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 16164718 16164913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 16168137 16168284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 16169630 16169741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 16173162 16173196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 16173425 16173475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (564 nt):
ATGGGCAACAAGCAGACAGTCTTCACACACGAGCAGCTGGAAGCGTATCAGGACTGCACATTTTTCACAA
GGAAGGAGATCATGAGGCTCTTCTATCGCTACCAGGACCTGGCCCCACAGCTCGTGCCCCTCGACTATAC
CACCTGCCCCGATGTGAAGGTGCCCTACGAGCTCATTGGCAGCATGCCCGAGCTGAAGGACAACCCCTTC
CGCCAGAGGATTGCCCAGGTATTCTCTGAGGATGGGGATGGCCACATGACCCTGGACAACTTTTTGGACA
TGTTTTCCGTGATGAGTGAAATGGCTCCCCGCGACCTCAAGGCTTACTATGCTTTTAAAATTTATGATTT
TAACAACGACGACTACATTTGTGCGTGGGACCTGGAGCAGACGGTGACCAAACTGACGCGGGGGGGGCTG
AGTGCCGAGGAGGTGAGCCTGGTATGTGAGAAGGTGCTGGATGAGGCTGATGGAGACCATGATGGGCGGC
TGTCCCTGGAAGATTTCCAGAACATGATCCTCCGGGCACCAGACTTCCTCAGCACCTTCCACATCCGAAT
CTGA

Translation (187 aa):
MGNKQTVFTHEQLEAYQDCTFFTRKEIMRLFYRYQDLAPQLVPLDYTTCPDVKVPYELIGSMPELKDNPF
RQRIAQVFSEDGDGHMTLDNFLDMFSVMSEMAPRDLKAYYAFKIYDFNNDDYICAWDLEQTVTKLTRGGL
SAEEVSLVCEKVLDEADGDHDGRLSLEDFQNMILRAPDFLSTFHIRI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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