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Report for CCDS43616.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43616.1 Public Homo sapiens 7 HEPACAM2 24 110 108 CCDS HistoryNCBI Gene:253012Re-query CCDS DB by CCDS ID:43616.1Re-query CCDS DB by GeneID:253012See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43616.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000394468.7 ENSP00000377980.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000394468.7Link to Ensembl Protein Viewer:ENSP00000377980.2Re-query CCDS DB by Nucleotide ID:ENST00000394468Re-query CCDS DB by Protein ID:ENSP00000377980
Original member Current member NCBI NM_001039372.4 NP_001034461.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001039372.4Link to Protein Sequence:NP_001034461.1Re-query CCDS DB by Nucleotide ID:NM_001039372Re-query CCDS DB by Protein ID:NP_001034461Link to BLAST:NP_001034461.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001034461.1 462 A8MVW5-1 462 100% 0 0

Chromosomal Locations for CCDS 43616.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 93189267 93189270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 93192254 93192363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 93195828 93195901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 93197241 93197278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 93197373 93197397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 93197485 93197610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 93208580 93208876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 93215401 93215685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 93219101 93219451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 93226368 93226446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1389 nt):
ATGGGACAGGATGCTTTCATGGAGCCCTTCGGTGACACACTTGGGGTCTTTCAGTGCAAAATATACCTCC
TTCTCTTCGGTGCTTGCTCGGGGCTGAAGGTGACAGTGCCATCACACACTGTCCATGGCGTCAGAGGTCA
GGCCCTCTACCTACCCGTCCACTATGGCTTCCACACTCCAGCATCAGACATCCAGATCATATGGCTATTT
GAGAGACCCCACACAATGCCCAAATACTTACTGGGCTCTGTGAATAAGTCTGTGGTTCCTGACTTGGAAT
ACCAACACAAGTTCACCATGATGCCACCCAATGCATCTCTGCTTATCAACCCACTGCAGTTCCCTGATGA
AGGCAATTACATCGTGAAGGTCAACATTCAGGGAAATGGAACTCTATCTGCCAGTCAGAAGATACAAGTC
ACGGTTGATGATCCTGTCACAAAGCCAGTGGTGCAGATTCATCCTCCCTCTGGGGCTGTGGAGTATGTGG
GGAACATGACCCTGACATGCCATGTGGAAGGGGGCACTCGGCTAGCTTACCAATGGCTAAAAAATGGGAG
ACCTGTCCACACCAGCTCCACCTACTCCTTTTCTCCCCAAAACAATACCCTTCATATTGCTCCAGTAACC
AAGGAAGACATTGGGAATTACAGCTGCCTGGTGAGGAACCCTGTCAGTGAAATGGAAAGTGATATCATTA
TGCCCATCATATATTATGGACCTTATGGACTTCAAGTGAATTCTGATAAAGGGCTAAAAGTAGGGGAAGT
GTTTACTGTTGACCTTGGAGAGGCCATCCTATTTGATTGTTCTGCTGATTCTCATCCCCCCAACACCTAC
TCCTGGATTAGGAGGACTGACAATACTACATATATCATTAAGCATGGGCCTCGCTTAGAAGTTGCATCTG
AGAAAGTAGCCCAGAAGACAATGGACTATGTGTGCTGTGCTTACAACAACATAACCGGCAGGCAAGATGA
AACTCATTTCACAGTTATCATCACTTCCGTAGGACTGGAGAAGCTTGCACAGAAAGGAAAATCATTGTCA
CCTTTAGCAAGTATAACTGGAATATCACTATTTTTGATTATATCCATGTGTCTTCTCTTCCTATGGAAAA
AATATCAACCCTACAAAGTTATAAAACAGAAACTAGAAGGCAGGCCAGAAACAGAATACAGGAAAGCTCA
AACATTTTCAGGCCATGAAGATGCTCTGGATGACTTCGGAATATATGAATTTGTTGCTTTTCCAGATGTT
TCTGGTGTTTCCAGGATCCCAAGCAGGTCTGTTCCAGCCTCTGATTGTGTATCGGGGCAAGATTTGCACA
GTACAGTGTATGAAGTTATTCAGCACATCCCTGCCCAGCAGCAAGACCATCCAGAGTGA

Translation (462 aa):
MGQDAFMEPFGDTLGVFQCKIYLLLFGACSGLKVTVPSHTVHGVRGQALYLPVHYGFHTPASDIQIIWLF
ERPHTMPKYLLGSVNKSVVPDLEYQHKFTMMPPNASLLINPLQFPDEGNYIVKVNIQGNGTLSASQKIQV
TVDDPVTKPVVQIHPPSGAVEYVGNMTLTCHVEGGTRLAYQWLKNGRPVHTSSTYSFSPQNNTLHIAPVT
KEDIGNYSCLVRNPVSEMESDIIMPIIYYGPYGLQVNSDKGLKVGEVFTVDLGEAILFDCSADSHPPNTY
SWIRRTDNTTYIIKHGPRLEVASEKVAQKTMDYVCCAYNNITGRQDETHFTVIITSVGLEKLAQKGKSLS
PLASITGISLFLIISMCLLFLWKKYQPYKVIKQKLEGRPETEYRKAQTFSGHEDALDDFGIYEFVAFPDV
SGVSRIPSRSVPASDCVSGQDLHSTVYEVIQHIPAQQQDHPE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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