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Report for CCDS3041.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3041.1 Public Homo sapiens 3 CHCHD6 24 110 108 CCDS HistoryNCBI Gene:84303Re-query CCDS DB by CCDS ID:3041.1Re-query CCDS DB by GeneID:84303See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3041.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000290913.8 ENSP00000290913.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000290913.8Link to Ensembl Protein Viewer:ENSP00000290913.3Re-query CCDS DB by Nucleotide ID:ENST00000290913Re-query CCDS DB by Protein ID:ENSP00000290913
Original member Current member NCBI NM_032343.3 NP_115719.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032343.3Link to Protein Sequence:NP_115719.1Re-query CCDS DB by Nucleotide ID:NM_032343Re-query CCDS DB by Protein ID:NP_115719Link to BLAST:NP_115719.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115719.1 235 Q9BRQ6 235 100% 0 0

Chromosomal Locations for CCDS 3041.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 126704313 126704399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 126727078 126727186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 126730561 126730630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 126733078 126733222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 126852647 126852730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 126914680 126914750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 126957416 126957551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 126960196 126960201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (708 nt):
ATGGGGAGCACGGAGAGCAGCGAGGGCCGCAGGGTGTCCTTCGGAGTGGACGAGGAGGAGCGGGTCCGGG
TGCTGCAGGGTGTCCGGCTGTCTGAAAACGTGGTGAACCGCATGAAGGAGCCCAGCTCTCCACCCCCTGC
TCCCACATCTTCTACCTTTGGCCTTCAAGATGGCAACTTGAGAGCCCCTCACAAAGAATCCACACTGCCC
AGGTCGGGGAGCAGTGGTGGCCAGCAGCCCTCAGGGATGAAGGAGGGTGTCAAGAGGTATGAACAGGAGC
ATGCTGCTATCCAGGATAAGCTCTTCCAGGTGGCAAAGAGGGAAAGAGAGGCTGCCACCAAGCACTCCAA
GGCATCCCTGCCCACGGGCGAAGGCAGCATCAGCCATGAGGAGCAGAAGTCAGTCCGGCTGGCCAGGGAG
CTGGAGAGCAGAGAGGCAGAGCTAAGACGCCGTGACACCTTCTACAAGGAGCAGCTGGAGCGTATTGAGA
GGAAGAATGCTGAGATGTATAAACTGTCTTCAGAGCAATTCCATGAGGCAGCCTCAAAGATGGAGAGCAC
AATAAAGCCCCGCAGGGTGGAGCCCGTCTGCTCAGGGTTGCAGGCCCAGATTCTCCACTGCTACCGAGAT
CGCCCGCATGAGGTGCTGCTGTGCTCGGACCTGGTCAAGGCATACCAGCGCTGCGTGAGCGCCGCCCACA
AGGGCTGA

Translation (235 aa):
MGSTESSEGRRVSFGVDEEERVRVLQGVRLSENVVNRMKEPSSPPPAPTSSTFGLQDGNLRAPHKESTLP
RSGSSGGQQPSGMKEGVKRYEQEHAAIQDKLFQVAKREREAATKHSKASLPTGEGSISHEEQKSVRLARE
LESREAELRRRDTFYKEQLERIERKNAEMYKLSSEQFHEAASKMESTIKPRRVEPVCSGLQAQILHCYRD
RPHEVLLCSDLVKAYQRCVSAAHKG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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