NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS13080.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13080.1 Public Homo sapiens 20 PRNP 24 110 108 CCDS HistoryNCBI Gene:5621Re-query CCDS DB by CCDS ID:13080.1Re-query CCDS DB by GeneID:5621See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13080.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000379440.9 ENSP00000368752.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000379440.9Link to Ensembl Protein Viewer:ENSP00000368752.4Re-query CCDS DB by Nucleotide ID:ENST00000379440Re-query CCDS DB by Protein ID:ENSP00000368752
Original member Current member EBI ENST00000430350.2 ENSP00000399376.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000430350.2Link to Ensembl Protein Viewer:ENSP00000399376.2Re-query CCDS DB by Nucleotide ID:ENST00000430350Re-query CCDS DB by Protein ID:ENSP00000399376
Original member Current member EBI ENST00000424424.2 ENSP00000411599.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000424424.2Link to Ensembl Protein Viewer:ENSP00000411599.2Re-query CCDS DB by Nucleotide ID:ENST00000424424Re-query CCDS DB by Protein ID:ENSP00000411599
Original member Current member EBI ENST00000457586.2 ENSP00000415284.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000457586.2Link to Ensembl Protein Viewer:ENSP00000415284.2Re-query CCDS DB by Nucleotide ID:ENST00000457586Re-query CCDS DB by Protein ID:ENSP00000415284
Original member Current member NCBI NM_000311.5 NP_000302.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000311.5Link to Protein Sequence:NP_000302.1Re-query CCDS DB by Nucleotide ID:NM_000311Re-query CCDS DB by Protein ID:NP_000302Link to BLAST:NP_000302.1
Original member Current member NCBI NM_001080121.3 NP_001073590.1 Accepted alive Link to Nucleotide Sequence:NM_001080121.3Link to Protein Sequence:NP_001073590.1Re-query CCDS DB by Nucleotide ID:NM_001080121Re-query CCDS DB by Protein ID:NP_001073590Link to BLAST:NP_001073590.1
Original member Current member NCBI NM_001080122.3 NP_001073591.1 Accepted alive Link to Nucleotide Sequence:NM_001080122.3Link to Protein Sequence:NP_001073591.1Re-query CCDS DB by Nucleotide ID:NM_001080122Re-query CCDS DB by Protein ID:NP_001073591Link to BLAST:NP_001073591.1
Original member Current member NCBI NM_001080123.3 NP_001073592.1 Accepted alive Link to Nucleotide Sequence:NM_001080123.3Link to Protein Sequence:NP_001073592.1Re-query CCDS DB by Nucleotide ID:NM_001080123Re-query CCDS DB by Protein ID:NP_001073592Link to BLAST:NP_001073592.1
Original member Current member NCBI NM_183079.4 NP_898902.1 Accepted alive Link to Nucleotide Sequence:NM_183079.4Link to Protein Sequence:NP_898902.1Re-query CCDS DB by Nucleotide ID:NM_183079Re-query CCDS DB by Protein ID:NP_898902Link to BLAST:NP_898902.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000302.1 253 P04156-1 253 100% 0 0
NP_001073590.1 253 P04156-1 253 100% 0 0
NP_001073591.1 253 P04156-1 253 100% 0 0
NP_001073592.1 253 P04156-1 253 100% 0 0
NP_898902.1 253 P04156-1 253 100% 0 0

Chromosomal Locations for CCDS 13080.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 4699221 4699982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (762 nt):
ATGGCGAACCTTGGCTGCTGGATGCTGGTTCTCTTTGTGGCCACATGGAGTGACCTGGGCCTCTGCAAGA
AGCGCCCGAAGCCTGGAGGATGGAACACTGGGGGCAGCCGATACCCGGGGCAGGGCAGCCCTGGAGGCAA
CCGCTACCCACCTCAGGGCGGTGGTGGCTGGGGGCAGCCTCATGGTGGTGGCTGGGGGCAGCCTCATGGT
GGTGGCTGGGGGCAGCCCCATGGTGGTGGCTGGGGACAGCCTCATGGTGGTGGCTGGGGTCAAGGAGGTG
GCACCCACAGTCAGTGGAACAAGCCGAGTAAGCCAAAAACCAACATGAAGCACATGGCTGGTGCTGCAGC
AGCTGGGGCAGTGGTGGGGGGCCTTGGCGGCTACATGCTGGGAAGTGCCATGAGCAGGCCCATCATACAT
TTCGGCAGTGACTATGAGGACCGTTACTATCGTGAAAACATGCACCGTTACCCCAACCAAGTGTACTACA
GGCCCATGGATGAGTACAGCAACCAGAACAACTTTGTGCACGACTGCGTCAATATCACAATCAAGCAGCA
CACGGTCACCACAACCACCAAGGGGGAGAACTTCACCGAGACCGACGTTAAGATGATGGAGCGCGTGGTT
GAGCAGATGTGTATCACCCAGTACGAGAGGGAATCTCAGGCCTATTACCAGAGAGGATCGAGCATGGTCC
TCTTCTCCTCTCCACCTGTGATCCTCCTGATCTCTTTCCTCATCTTCCTGATAGTGGGATGA

Translation (253 aa):
MANLGCWMLVLFVATWSDLGLCKKRPKPGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHG
GGWGQPHGGGWGQPHGGGWGQGGGTHSQWNKPSKPKTNMKHMAGAAAAGAVVGGLGGYMLGSAMSRPIIH
FGSDYEDRYYRENMHRYPNQVYYRPMDEYSNQNNFVHDCVNITIKQHTVTTTTKGENFTETDVKMMERVV
EQMCITQYERESQAYYQRGSSMVLFSSPPVILLISFLIFLIVG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH