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Report for CCDS2826.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2826.1 Public Homo sapiens 3 NPRL2 24 110 108 CCDS HistoryNCBI Gene:10641Re-query CCDS DB by CCDS ID:2826.1Re-query CCDS DB by GeneID:10641See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2826.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000232501.8 ENSP00000232501.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000232501.8Link to Ensembl Protein Viewer:ENSP00000232501.3Re-query CCDS DB by Nucleotide ID:ENST00000232501Re-query CCDS DB by Protein ID:ENSP00000232501
Original member Current member NCBI NM_006545.5 NP_006536.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006545.5Link to Protein Sequence:NP_006536.3Re-query CCDS DB by Nucleotide ID:NM_006545Re-query CCDS DB by Protein ID:NP_006536Link to BLAST:NP_006536.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006536.3 380 Q8WTW4-1 380 100% 0 0

Chromosomal Locations for CCDS 2826.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 50347606 50347673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50347759 50347901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50348124 50348241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50348317 50348410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50348527 50348563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50348685 50348782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50348874 50349010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50349386 50349494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50349665 50349833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50349931 50350022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50350575 50350652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1143 nt):
ATGGGCAGCGGCTGCCGCATCGAATGCATATTCTTCAGCGAGTTCCACCCCACGCTGGGACCCAAGATCA
CCTATCAGGTCCCTGAAGACTTCATCTCCCGAGAGCTGTTTGACACAGTCCAAGTGTACATCATCACCAA
GCCAGAGCTGCAGAACAAGCTTATCACTGTCACAGCTATGGAAAAGAAGCTGATCGGCTGTCCTGTGTGC
ATCGAACACAAGAAGTACAGCCGCAATGCTCTCCTCTTCAACCTGGGCTTCGTGTGTGATGCCCAGGCCA
AGACCTGCGCCCTCGAGCCCATTGTTAAAAAGCTGGCTGGCTATCTGACCACACTAGAGCTAGAGAGCAG
CTTCGTGTCCATGGAGGAGAGCAAGCAGAAGTTGGTGCCCATCATGACCATCTTGCTGGAGGAGCTAAAT
GCCTCAGGCCGGTGCACTCTGCCCATTGATGAGTCCAACACCATCCACTTGAAGGTGATTGAGCAGCGGC
CAGACCCTCCGGTGGCCCAGGAGTATGATGTACCTGTCTTTACCAAAGACAAGGAGGATTTCTTCAACTC
ACAGTGGGACCTCACTACACAACAAATCCTGCCCTACATTGATGGGTTCCGCCACATCCAGAAGATTTCA
GCAGAGGCAGATGTGGAGCTCAACCTGGTGCGCATTGCTATCCAGAACCTGCTGTACTACGGCGTTGTGA
CACTGGTGTCCATCCTCCAGTACTCCAATGTATACTGCCCAACGCCCAAGGTCCAGGACCTGGTAGATGA
CAAGTCCCTGCAAGAGGCATGTCTATCCTACGTGACCAAGCAAGGGCACAAGAGGGCCAGTCTCCGGGAT
GTGTTCCAGCTATACTGCAGCCTGAGCCCTGGCACTACCGTGCGAGACCTCATTGGCCGCCACCCCCAGC
AGCTGCAGCATGTTGATGAACGGAAGCTGATCCAGTTCGGGCTTATGAAGAACCTCATCAGGCGACTACA
GAAGTATCCTGTGCGGGTGACTCGGGAAGAGCAGAGCCACCCTGCCCGGCTTTATACAGGCTGCCACAGC
TATGACGAGATCTGCTGCAAGACAGGCATGAGCTACCATGAGCTGGATGAGCGGCTTGAAAATGACCCCA
ACATCATCATCTGCTGGAAGTGA

Translation (380 aa):
MGSGCRIECIFFSEFHPTLGPKITYQVPEDFISRELFDTVQVYIITKPELQNKLITVTAMEKKLIGCPVC
IEHKKYSRNALLFNLGFVCDAQAKTCALEPIVKKLAGYLTTLELESSFVSMEESKQKLVPIMTILLEELN
ASGRCTLPIDESNTIHLKVIEQRPDPPVAQEYDVPVFTKDKEDFFNSQWDLTTQQILPYIDGFRHIQKIS
AEADVELNLVRIAIQNLLYYGVVTLVSILQYSNVYCPTPKVQDLVDDKSLQEACLSYVTKQGHKRASLRD
VFQLYCSLSPGTTVRDLIGRHPQQLQHVDERKLIQFGLMKNLIRRLQKYPVRVTREEQSHPARLYTGCHS
YDEICCKTGMSYHELDERLENDPNIIICWK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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