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Report for CCDS30679.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30679.1 Public Homo sapiens 1 POU3F1 24 110 108 CCDS HistoryNCBI Gene:5453Re-query CCDS DB by CCDS ID:30679.1Re-query CCDS DB by GeneID:5453See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30679.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373012.5 ENSP00000362103.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000373012.5Link to Ensembl Protein Viewer:ENSP00000362103.2Re-query CCDS DB by Nucleotide ID:ENST00000373012Re-query CCDS DB by Protein ID:ENSP00000362103
Original member Current member NCBI NM_002699.4 NP_002690.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002699.4Link to Protein Sequence:NP_002690.3Re-query CCDS DB by Nucleotide ID:NM_002699Re-query CCDS DB by Protein ID:NP_002690Link to BLAST:NP_002690.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002690.3 451 Q03052 451 100% 0 0

Chromosomal Locations for CCDS 30679.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 38045388 38046743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1356 nt):
ATGGCCACCACCGCGCAGTACCTGCCGCGGGGCCCCGGTGGCGGAGCCGGGGGCACCGGGCCGCTTATGC
ACCCGGACGCCGCGGCGGCGGCGGCGGCGGCGGCGGCCGCGGAGCGATTGCATGCAGGGGCCGCGTACCG
CGAAGTGCAGAAGCTGATGCACCACGAGTGGCTGGGCGCGGGCGCGGGCCACCCCGTGGGCCTAGCGCAC
CCCCAGTGGCTACCCACGGGAGGAGGCGGCGGCGGCGATTGGGCCGGCGGCCCGCACCTAGAACACGGCA
AGGCAGGCGGCGGCGGCACCGGCCGAGCCGACGACGGCGGCGGCGGCGGAGGTTTCCACGCGCGCCTGGT
GCACCAGGGGGCGGCCCACGCGGGCGCGGCATGGGCGCAGGGCAGCACAGCGCACCACTTGGGCCCGGCC
ATGTCGCCCTCGCCCGGGGCCAGCGGGGGCCACCAGCCCCAGCCGCTCGGGCTGTACGCGCAGGCGGCCT
ACCCGGGGGGCGGCGGCGGCGGCCTGGCCGGGATGCTGGCGGCGGGCGGTGGCGGCGCGGGGCCGGGCCT
GCACCACGCGCTGCACGAGGATGGCCACGAGGCGCAGCTGGAGCCGTCGCCGCCGCCGCATCTGGGCGCC
CACGGACACGCACACGGACATGCACACGCGGGCGGCCTGCACGCGGCGGCGGCGCACCTGCACCCGGGCG
CGGGCGGCGGCGGCTCATCGGTGGGCGAGCACTCGGACGAGGATGCGCCCAGCTCGGACGACCTGGAGCA
GTTCGCCAAGCAGTTCAAGCAGCGGCGCATCAAGCTGGGCTTTACGCAGGCCGACGTGGGGCTGGCGCTG
GGCACGCTCTACGGTAACGTGTTCTCGCAGACCACCATCTGCCGCTTCGAGGCCCTGCAGCTGAGCTTCA
AGAACATGTGCAAGCTCAAGCCGCTGCTCAACAAGTGGCTGGAGGAGACCGACTCGTCCAGCGGCAGCCC
CACCAACCTGGACAAGATCGCGGCGCAGGGCCGCAAGCGCAAGAAGCGCACGTCCATCGAGGTGGGGGTC
AAAGGCGCGCTCGAGAGCCACTTTCTCAAGTGCCCCAAGCCCTCGGCGCACGAGATCACCGGCTTGGCAG
ACAGCCTGCAGCTGGAGAAGGAGGTGGTGCGCGTCTGGTTCTGCAACCGGCGGCAGAAGGAGAAGCGCAT
GACCCCTGCGGCCGGCGCGGGCCACCCGCCCATGGACGATGTATACGCGCCTGGGGAGCTAGGGCCTGGC
GGGGGCGGCGCATCGCCACCCTCCGCGCCCCCACCGCCCCCGCCGGCGGCGCTGCACCACCACCACCACC
ACACACTGCCCGGCTCAGTGCAGTGA

Translation (451 aa):
MATTAQYLPRGPGGGAGGTGPLMHPDAAAAAAAAAAAERLHAGAAYREVQKLMHHEWLGAGAGHPVGLAH
PQWLPTGGGGGGDWAGGPHLEHGKAGGGGTGRADDGGGGGGFHARLVHQGAAHAGAAWAQGSTAHHLGPA
MSPSPGASGGHQPQPLGLYAQAAYPGGGGGGLAGMLAAGGGGAGPGLHHALHEDGHEAQLEPSPPPHLGA
HGHAHGHAHAGGLHAAAAHLHPGAGGGGSSVGEHSDEDAPSSDDLEQFAKQFKQRRIKLGFTQADVGLAL
GTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEETDSSSGSPTNLDKIAAQGRKRKKRTSIEVGV
KGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTPAAGAGHPPMDDVYAPGELGPG
GGGASPPSAPPPPPPAALHHHHHHTLPGSVQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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