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Report for CCDS36998.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36998.1 Public Mus musculus 14 Klf12 23 108 98 CCDS HistoryNCBI Gene:16597Re-query CCDS DB by CCDS ID:36998.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36998.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000097079.4 ENSMUSP00000094844.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000097079.4Link to Ensembl Protein Viewer:ENSMUSP00000094844.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000097079Re-query CCDS DB by Protein ID:ENSMUSP00000094844
Original member Current member EBI ENSMUST00000228216.1 ENSMUSP00000153901.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000228216.1Link to Ensembl Protein Viewer:ENSMUSP00000153901.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000228216Re-query CCDS DB by Protein ID:ENSMUSP00000153901
Original member NCBI NM_010636.3 NP_034766.2 Updated not alive Link to Nucleotide Sequence:NM_010636.3Link to Protein Sequence:NP_034766.2Re-query CCDS DB by Nucleotide ID:NM_010636Re-query CCDS DB by Protein ID:NP_034766
Current member NCBI NM_010636.4 NP_034766.2 Accepted alive Link to Nucleotide Sequence:NM_010636.4Link to Protein Sequence:NP_034766.2Re-query CCDS DB by Nucleotide ID:NM_010636Re-query CCDS DB by Protein ID:NP_034766Link to BLAST:NP_034766.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034766.2 402 O35738 402 100% 0 0

Chromosomal Locations for CCDS 36998.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 99875133 99875314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 99900082 99900239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 99942034 99942096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 99987431 99987566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 100022622 100023168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 100109771 100109860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 100149732 100149764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1209 nt):
ATGAATATCCATATGAAGAGGAAAACCATAAAGAATCTCAGCGCCCTTGAGAACAGAATGCTAATGCTTG
ATGGAATGCCGGCAGTCAGAGTCAAAACCGAGCTTGTGGAATCTGAACAAGGGTCTCCAAACGTCCACAA
CTACCCCGATATGGAAGCTGTCCCCCTCTTGCTAAATAATGTGAAAGGGGAGCCCCCAGAGGACTCACTG
CCTGTAGATCACTTTCAGACACAAACTGAGCCAGTGGACTTGTCAATCAACAAAGCCAGGACCTCCCCTA
CTGCAGCGTCATCCTCCCCTGTCTCCATGACAGCGTCCGCCTCCTCACCTTCTTCAACTTCAACCTCTTC
ATCCTCTTCTAGTCGTCCAGCCTCATCCCCCACTGTTATAACATCAGTATCTTCAGCATCGTCTTCGTCA
ACAGTGTTATCTCCAGGACCCCTTGTTGCCTCTGCATCTGGCGTGGGCGGCCAGCAGTTCTTGCACATCA
TCCATCCGGTCCCACCTTCCAGTCCCATGAACTTACAGTCTAACAAACTCAGTCATGTTCATCGAATCCC
TGTGGTGGTACAGTCAGTGCCGGTTGTCTACACAGCTGTACGGTCACCTGGAAATGTGAACAACACTATT
GTTGTACCGCTCCTGGAGGATGGGAGGAGCCATGGCAAAGCACAAATGGAGCCCCGAGGCCTATCTCCCA
GACAGAGTAAAAGTGACAGTGACGATGATGACCTGCCAAATGTGACCTTAGATAGCGTTAATGAAACTGG
ATCCACGGCCCTTTCCATAGCCAGAGCAGTACAAGAGGTACATCCATCCCCGGTATCCAGGGTCCGAGGA
AATCGAATGAATAACCAGAAGTTTGCTTGTTCAATCTCACCATTTAGCATTGAGAGCACAAGACGCCAGA
GACGATCAGAATCCCCAGACTCCAGGAAACGGCGCATCCACAGATGTGACTTCGAAGGGTGCAACAAAGT
CTATACAAAAAGTTCTCACCTGAAGGCACACCGGAGAACACACACAGGAGAGAAGCCCTACAAATGCACG
TGGGAAGGCTGCACCTGGAAGTTTGCCCGTTCAGATGAACTGACCAGACACTACCGCAAACACACGGGAG
TGAAGCCATTCAAGTGCGCGGACTGTGACCGCAGCTTCTCGAGGTCAGACCACCTGGCACTGCACCGTAG
GAGGCACATGCTGGTGTGA

Translation (402 aa):
MNIHMKRKTIKNLSALENRMLMLDGMPAVRVKTELVESEQGSPNVHNYPDMEAVPLLLNNVKGEPPEDSL
PVDHFQTQTEPVDLSINKARTSPTAASSSPVSMTASASSPSSTSTSSSSSSRPASSPTVITSVSSASSSS
TVLSPGPLVASASGVGGQQFLHIIHPVPPSSPMNLQSNKLSHVHRIPVVVQSVPVVYTAVRSPGNVNNTI
VVPLLEDGRSHGKAQMEPRGLSPRQSKSDSDDDDLPNVTLDSVNETGSTALSIARAVQEVHPSPVSRVRG
NRMNNQKFACSISPFSIESTRRQRRSESPDSRKRRIHRCDFEGCNKVYTKSSHLKAHRRTHTGEKPYKCT
WEGCTWKFARSDELTRHYRKHTGVKPFKCADCDRSFSRSDHLALHRRRHMLV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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