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Report for CCDS687.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
687.2 Public Homo sapiens 1 IFI44L 24 110 108 CCDS HistoryNCBI Gene:10964Re-query CCDS DB by CCDS ID:687.2Re-query CCDS DB by GeneID:10964See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 687.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000370751.10 ENSP00000359787.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000370751.10Link to Ensembl Protein Viewer:ENSP00000359787.4Re-query CCDS DB by Nucleotide ID:ENST00000370751Re-query CCDS DB by Protein ID:ENSP00000359787
Original member Current member NCBI NM_001375646.1 NP_001362575.1 Accepted alive Link to Nucleotide Sequence:NM_001375646.1Link to Protein Sequence:NP_001362575.1Re-query CCDS DB by Nucleotide ID:NM_001375646Re-query CCDS DB by Protein ID:NP_001362575Link to BLAST:NP_001362575.1
Original member Current member NCBI NM_006820.4 NP_006811.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006820.4Link to Protein Sequence:NP_006811.2Re-query CCDS DB by Nucleotide ID:NM_006820Re-query CCDS DB by Protein ID:NP_006811Link to BLAST:NP_006811.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001362575.1 452 Q53G44-1 452 100% 0 0
NP_006811.2 452 Q53G44-1 452 100% 0 0

Chromosomal Locations for CCDS 687.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 78627916 78628393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78628951 78628999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78629720 78629915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78635337 78635489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78637032 78637203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78641021 78641121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78641435 78641609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78641775 78641809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1359 nt):
ATGGAAGTGACAACAAGATTGACATGGAATGATGAAAATCATCTGCGCAAGCTGCTTGGAAATGTTTCTT
TGAGTCTTCTCTATAAGTCTAGTGTTCATGGAGGTAGCATTGAAGATATGGTTGAAAGATGCAGCCGTCA
GGGATGTACTATAACAATGGCTTACATTGATTACAATATGATTGTAGCCTTTATGCTTGGAAATTATATT
AATTTACATGAAAGTTCTACAGAGCCAAATGATTCCCTATGGTTTTCACTTCAAAAGAAAAATGACACCA
CTGAAATAGAAACTTTACTCTTAAATACAGCACCAAAAATTATTGATGAGCAACTGGTGTGTCGTTTATC
GAAAACGGATATTTTCATTATATGTCGAGATAATAAAATTTATCTAGATAAAATGATAACAAGAAACTTG
AAACTAAGGTTTTATGGCCACCGTCAGTATTTGGAATGTGAAGTTTTTCGAGTTGAAGGAATTAAGGATA
ACCTAGACGACATAAAGAGGATAATTAAAGCCAGAGAGCACAGAAATAGGCTTCTAGCAGACATCAGAGA
CTATAGGCCCTATGCAGACTTGGTTTCAGAAATTCGTATTCTTTTGGTGGGTCCAGTTGGGTCTGGAAAG
TCCAGTTTTTTCAATTCAGTCAAGTCTATTTTTCATGGCCATGTGACTGGCCAAGCCGTAGTGGGGTCTG
ATATCACCAGCATAACCGAGCGGTATAGGATATATTCTGTTAAAGATGGAAAAAATGGAAAATCTCTGCC
ATTTATGTTGTGTGACACTATGGGGCTAGATGGGGCAGAAGGAGCAGGACTGTGCATGGATGACATTCCC
CACATCTTAAAAGGTTGTATGCCAGACAGATATCAGTTTAATTCCCGTAAACCAATTACACCTGAGCATT
CTACTTTTATCACCTCTCCATCTCTGAAGGACAGGATTCACTGTGTGGCTTATGTCTTAGACATCAACTC
TATTGACAATCTCTACTCTAAAATGTTGGCAAAAGTGAAGCAAGTTCACAAAGAAGTATTAAACTGTGGT
ATAGCATATGTGGCCTTGCTTACTAAAGTGGATGATTGCAGTGAGGTTCTTCAAGACAACTTTTTAAACA
TGAGTAGATCTATGACTTCTCAAAGCCGGGTCATGAATGTCCATAAAATGCTAGGCATTCCTATTTCCAA
TATTTTGATGGTTGGAAATTATGCTTCAGATTTGGAACTGGACCCCATGAAGGATATTCTCATCCTCTCT
GCACTGAGGCAGATGCTGCGGGCTGCAGATGATTTTTTAGAAGATTTGCCTCTTGAGGAAACTGGTGCAA
TTGAGAGAGCGTTACAGCCCTGCATTTGA

Translation (452 aa):
MEVTTRLTWNDENHLRKLLGNVSLSLLYKSSVHGGSIEDMVERCSRQGCTITMAYIDYNMIVAFMLGNYI
NLHESSTEPNDSLWFSLQKKNDTTEIETLLLNTAPKIIDEQLVCRLSKTDIFIICRDNKIYLDKMITRNL
KLRFYGHRQYLECEVFRVEGIKDNLDDIKRIIKAREHRNRLLADIRDYRPYADLVSEIRILLVGPVGSGK
SSFFNSVKSIFHGHVTGQAVVGSDITSITERYRIYSVKDGKNGKSLPFMLCDTMGLDGAEGAGLCMDDIP
HILKGCMPDRYQFNSRKPITPEHSTFITSPSLKDRIHCVAYVLDINSIDNLYSKMLAKVKQVHKEVLNCG
IAYVALLTKVDDCSEVLQDNFLNMSRSMTSQSRVMNVHKMLGIPISNILMVGNYASDLELDPMKDILILS
ALRQMLRAADDFLEDLPLEETGAIERALQPCI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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