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Report for CCDS64609.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
64609.1 Public Homo sapiens 7 TRA2A 24 110 108 CCDS HistoryNCBI Gene:29896Re-query CCDS DB by CCDS ID:64609.1Re-query CCDS DB by GeneID:29896See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 64609.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000621813.4 ENSP00000480822.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000621813.4Link to Ensembl Protein Viewer:ENSP00000480822.1Re-query CCDS DB by Nucleotide ID:ENST00000621813Re-query CCDS DB by Protein ID:ENSP00000480822
Original member Current member NCBI NM_001282757.2 NP_001269686.1 Accepted alive Link to Nucleotide Sequence:NM_001282757.2Link to Protein Sequence:NP_001269686.1Re-query CCDS DB by Nucleotide ID:NM_001282757Re-query CCDS DB by Protein ID:NP_001269686Link to BLAST:NP_001269686.1
Original member Current member NCBI NM_001282758.2 NP_001269687.1 Accepted alive Link to Nucleotide Sequence:NM_001282758.2Link to Protein Sequence:NP_001269687.1Re-query CCDS DB by Nucleotide ID:NM_001282758Re-query CCDS DB by Protein ID:NP_001269687Link to BLAST:NP_001269687.1
Original member Current member NCBI NM_001362760.2 NP_001349689.1 Accepted alive Link to Nucleotide Sequence:NM_001362760.2Link to Protein Sequence:NP_001349689.1Re-query CCDS DB by Nucleotide ID:NM_001362760Re-query CCDS DB by Protein ID:NP_001349689Link to BLAST:NP_001349689.1
Original member Current member NCBI NM_001362761.2 NP_001349690.1 Accepted alive Link to Nucleotide Sequence:NM_001362761.2Link to Protein Sequence:NP_001349690.1Re-query CCDS DB by Nucleotide ID:NM_001362761Re-query CCDS DB by Protein ID:NP_001349690Link to BLAST:NP_001349690.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001269686.1 181 Q13595-3 181 100% 0 0
NP_001269687.1 181 Q13595-3 181 100% 0 0
NP_001349689.1 181 Q13595-3 181 100% 0 0
NP_001349690.1 181 Q13595-3 181 100% 0 0

Chromosomal Locations for CCDS 64609.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 23505559 23505569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 23505746 23505813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 23506138 23506266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 23507420 23507535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 23512894 23513082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 23516363 23516395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (546 nt):
ATGTCTAACCGGAGAAGACATACTGGCAGCAGGGCAAATCCAGATCCCAACACTTGCCTTGGAGTGTTTG
GCCTCAGTTTGTACACAACAGAGAGGGATCTTCGTGAAGTATTTTCTCGATATGGACCATTGAGTGGTGT
CAATGTGGTTTATGATCAGCGAACTGGGCGATCTCGAGGATTTGCTTTTGTGTATTTTGAGAGAATAGAT
GACTCAAAGGAGGCTATGGAAAGGGCAAATGGAATGGAGCTGGATGGTAGAAGAATTCGGGTGGATTATT
CTATAACCAAGAGAGCGCACACACCAACACCAGGCATCTACATGGGCAGACCAACTCATAGTGGTGGGGG
TGGTGGAGGAGGCGGCGGCGGTGGAGGTGGAGGTGGTGGCAGACGTCGAGATTCTTACTATGATAGAGGA
TATGATCGTGGGTATGACAGATATGAAGACTATGATTACCGATACAGAAGACGATCACCTTCTCCTTATT
ATAGTCGATATAGATCACGATCAAGATCTCGTTCCTACAGCCCAAGACGCTATTGA

Translation (181 aa):
MSNRRRHTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERID
DSKEAMERANGMELDGRRIRVDYSITKRAHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGRRRDSYYDRG
YDRGYDRYEDYDYRYRRRSPSPYYSRYRSRSRSRSYSPRRY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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