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Report for CCDS44072.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44072.1 Public Homo sapiens 1 ATP13A2 24 110 108 CCDS HistoryNCBI Gene:23400Re-query CCDS DB by CCDS ID:44072.1Re-query CCDS DB by GeneID:23400See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44072.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000341676.9 ENSP00000341115.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000341676.9Link to Ensembl Protein Viewer:ENSP00000341115.5Re-query CCDS DB by Nucleotide ID:ENST00000341676Re-query CCDS DB by Protein ID:ENSP00000341115
Original member Current member NCBI NM_001141974.3 NP_001135446.1 Accepted alive Link to Nucleotide Sequence:NM_001141974.3Link to Protein Sequence:NP_001135446.1Re-query CCDS DB by Nucleotide ID:NM_001141974Re-query CCDS DB by Protein ID:NP_001135446Link to BLAST:NP_001135446.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001135446.1 1158 Q9NQ11-2 1158 100% 0 0

Chromosomal Locations for CCDS 44072.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 16985985 16986358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16986805 16986956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16987046 16987269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16988138 16988234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16988322 16988474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16989691 16989770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16990127 16990287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16991734 16991858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16992009 16992129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16992243 16992402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16992486 16992581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16993629 16993835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16995976 16996164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16996254 16996300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16996386 16996496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16997020 16997175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17000011 17000142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17000246 17000312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17000400 17000534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17002034 17002103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17002296 17002373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17004332 17004411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17004707 17004821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17005014 17005072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17005374 17005556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17005684 17005778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17011729 17011738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3477 nt):
ATGAGCGCAGACAGCAGCCCTCTCGTGGGCAGCACGCCCACCGGTTATGGGACCCTGACGATAGGGACAT
CAATAGATCCCCTCAGCTCCTCAGTTTCATCCGTGAGGCTCAGCGGCTACTGTGGCAGTCCATGGAGGGT
CATCGGCTATCACGTCGTGGTCTGGATGATGGCTGGGATCCCTTTGCTGCTCTTCCGTTGGAAGCCCCTG
TGGGGGGTGCGGCTGCGGCTCCGGCCCTGCAACCTGGCCCACGCCGAAACACTCGTTATCGAAATAAGAG
ACAAAGAGGATAGTTCCTGGCAGCTCTTCACTGTCCAGGTGCAGACTGAGGCCATCGGCGAGGGCAGCCT
GGAGCCGTCCCCACAGTCCCAGGCAGAGGATGGCCGGAGCCAGGCGGCAGTTGGGGCGGTACCAGAGGGT
GCCTGGAAGGATACGGCCCAGCTCCACAAGAGCGAGGAGGCGAAGCGGGTGCTGCGGTATTACCTCTTCC
AGGGCCAGCGCTATATCTGGATCGAGACCCAGCAAGCCTTCTACCAGGTCAGCCTCCTGGACCATGGCCG
CTCTTGTGACGACGTCCACCGCTCCCGCCATGGCCTCAGCCTCCAGGACCAAATGGTGAGGAAGGCCATT
TACGGCCCCAACGTGATCAGCATACCGGTCAAGTCCTACCCCCAGCTGCTGGTGGACGAGGCACTGAACC
CCTACTATGGGTTCCAGGCCTTCAGCATCGCGCTGTGGCTGGCTGACCACTACTACTGGTACGCCCTGTG
CATCTTCCTCATTTCCTCCATCTCCATCTGCCTGTCGCTGTACAAGACCAGAAAGCAAAGCCAGACTCTA
AGGGACATGGTCAAGTTGTCCATGCGGGTGTGCGTGTGCCGGCCAGGGGGAGAGGAAGAGTGGGTGGACT
CCAGTGAGCTAGTGCCCGGAGACTGCCTGGTGCTGCCCCAGGAGGGTGGGCTGATGCCCTGTGATGCCGC
CCTGGTGGCCGGCGAGTGCATGGTGAATGAGAGCTCTCTGACAGGAGAGAGCATTCCAGTGCTGAAGACG
GCACTGCCGGAGGGGCTGGGGCCCTACTGTGCAGAGACACACCGGCGGCACACACTCTTCTGCGGGACCC
TCATCTTGCAGGCCCGGGCCTATGTGGGACCGCACGTCCTGGCAGTGGTGACCCGCACAGGGTTCTGCAC
GGCAAAAGGGGGCCTGGTGAGCTCCATCTTGCACCCCCGGCCCATCAACTTCAAGTTCTATAAACACAGC
ATGAAGTTTGTGGCTGCCCTCTCTGTCCTGGCTCTCCTCGGCACCATCTACAGCATCTTCATCCTCTACC
GAAACCGGGTGCCTCTGAATGAGATTGTAATCCGGGCTCTCGACCTGGTGACCGTGGTGGTGCCACCTGC
CCTGCCTGCTGCCATGACTGTGTGCACGCTCTACGCCCAGAGCCGACTGCGGAGACAGGGCATTTTCTGC
ATCCACCCACTGCGCATCAACCTGGGGGGCAAGCTGCAGCTGGTGTGTTTCGACAAGACGGGCACCCTCA
CTGAGGACGGCTTAGACGTGATGGGGGTGGTGCCCCTGAAGGGGCAGGCATTCCTGCCCCTGGTCCCAGA
GCCTCGCCGCCTGCCTGTGGGGCCCCTGCTCCGAGCACTGGCCACCTGCCATGCCCTCAGCCGGCTCCAG
GACACCCCCGTGGGCGACCCCATGGACTTGAAGATGGTGGAGTCTACTGGCTGGGTCCTGGAGGAAGAGC
CGGCTGCAGACTCAGCATTTGGGACCCAGGTCTTGGCAGTGATGAGACCCCCACTTTGGGAGCCCCAGCT
GCAGGCAATGGAGGAGCCCCCGGTGCCAGTCAGCGTCCTCCACCGCTTCCCCTTCTCTTCGGCTCTGCAG
CGCATGAGTGTGGTGGTGGCGTGGCCAGGGGCCACTCAGCCCGAGGCCTACGTCAAAGGCTCCCCGGAGC
TGGTGGCAGGGCTCTGCAACCCCGAGACAGTGCCCACCGACTTCGCCCAGATGCTGCAGAGCTATACAGC
TGCTGGCTACCGTGTCGTGGCCCTGGCCAGCAAGCCACTGCCCACTGTGCCCAGCCTGGAGGCAGCCCAG
CAACTGACGAGGGACACTGTGGAAGGAGACCTGAGCCTCCTGGGGCTGCTGGTCATGAGGAACCTACTGA
AGCCGCAGACAACGCCAGTTATCCAGGCTCTGCGAAGGACCCGCATCCGCGCCGTCATGGTGACAGGGGA
CAACCTGCAGACAGCGGTGACTGTGGCCCGGGGCTGTGGCATGGTGGCCCCCCAGGAGCATCTGATCATC
GTCCACGCCACCCACCCTGAGCGGGGTCAGCCTGCCTCTCTCGAGTTCCTGCCGATGGAGTCCCCCACAG
CCGTGAATGGCGTTAAGGTCCTGGTCCAGGGCACTGTCTTTGCCCGCATGGCCCCTGAGCAGAAGACAGA
GCTGGTGTGCGAGCTACAGAAGCTTCAGTACTGCGTGGGCATGTGCGGAGACGGCGCCAATGACTGTGGG
GCCCTGAAGGCGGCTGATGTCGGCATCTCGCTGTCCCAGGCAGAAGCCTCAGTGGTCTCACCCTTCACCT
CGAGCATGGCCAGTATTGAGTGCGTGCCCATGGTCATCAGGGAGGGGCGCTGTTCCCTTGACACTTCGTT
CAGCGTCTTCAAGTACATGGCTCTGTACAGCCTGACCCAGTTCATCTCCGTCCTGATCCTCTACACGATC
AACACCAACCTGGGTGACCTGCAGTTCCTGGCCATCGACCTGGTCATCACCACCACAGTGGCAGTGCTCA
TGAGCCGCACGGGGCCAGCGCTGGTCCTGGGACGGGTGCGGCCACCGGGGGCGCTGCTCAGCGTGCCCGT
GCTCAGCAGCCTGCTGCTGCAGATGGTCCTGGTGACCGGCGTGCAGCTAGGGGGCTACTTCCTGACCCTG
GCCCAGCCATGGTTCGTGCCTCTGAACAGGACAGTGGCCGCACCAGACAACCTGCCCAACTACGAGAACA
CCGTGGTCTTCTCTCTGTCCAGCTTCCAGTACCTCATCCTGGCTGCAGCCGTGTCCAAGGGGGCGCCCTT
CCGCCGGCCGCTCTACACCAATGAGCGTGCTAGACCAGTGCCTCCCCGCCTGCCTGCGCCGCCTCCGGCC
CAAGCGGGCCTCCAAGAAGCGCTTCAAGCAGCTGGAACGAGAGCTGGCCGAGCAGCCCTGGCCGCCGCTG
CCCGCCGGCCCCCTGAGGTAGTGCAGGCCCACGGGCACCCCAGACACTGGAACTCCCTGCCTCTGAGCCA
CCAACTGGACCCCTCTCCAGCAACACCACCGCCACCACCTCCCACATCCCTGAGGTTGGCGACTGTCTAC
ACTCCTCCCCCGAGACCACCCCCACCCTGGGGAAGCGTTGACTACTGTCCCCTACCTTGGACCATCCCGC
GTAGGGGTGGCAGCCCCCAGCTCCCCTCAGTGCTGCTGTCAGTGTAG

Translation (1158 aa):
MSADSSPLVGSTPTGYGTLTIGTSIDPLSSSVSSVRLSGYCGSPWRVIGYHVVVWMMAGIPLLLFRWKPL
WGVRLRLRPCNLAHAETLVIEIRDKEDSSWQLFTVQVQTEAIGEGSLEPSPQSQAEDGRSQAAVGAVPEG
AWKDTAQLHKSEEAKRVLRYYLFQGQRYIWIETQQAFYQVSLLDHGRSCDDVHRSRHGLSLQDQMVRKAI
YGPNVISIPVKSYPQLLVDEALNPYYGFQAFSIALWLADHYYWYALCIFLISSISICLSLYKTRKQSQTL
RDMVKLSMRVCVCRPGGEEEWVDSSELVPGDCLVLPQEGGLMPCDAALVAGECMVNESSLTGESIPVLKT
ALPEGLGPYCAETHRRHTLFCGTLILQARAYVGPHVLAVVTRTGFCTAKGGLVSSILHPRPINFKFYKHS
MKFVAALSVLALLGTIYSIFILYRNRVPLNEIVIRALDLVTVVVPPALPAAMTVCTLYAQSRLRRQGIFC
IHPLRINLGGKLQLVCFDKTGTLTEDGLDVMGVVPLKGQAFLPLVPEPRRLPVGPLLRALATCHALSRLQ
DTPVGDPMDLKMVESTGWVLEEEPAADSAFGTQVLAVMRPPLWEPQLQAMEEPPVPVSVLHRFPFSSALQ
RMSVVVAWPGATQPEAYVKGSPELVAGLCNPETVPTDFAQMLQSYTAAGYRVVALASKPLPTVPSLEAAQ
QLTRDTVEGDLSLLGLLVMRNLLKPQTTPVIQALRRTRIRAVMVTGDNLQTAVTVARGCGMVAPQEHLII
VHATHPERGQPASLEFLPMESPTAVNGVKVLVQGTVFARMAPEQKTELVCELQKLQYCVGMCGDGANDCG
ALKAADVGISLSQAEASVVSPFTSSMASIECVPMVIREGRCSLDTSFSVFKYMALYSLTQFISVLILYTI
NTNLGDLQFLAIDLVITTTVAVLMSRTGPALVLGRVRPPGALLSVPVLSSLLLQMVLVTGVQLGGYFLTL
AQPWFVPLNRTVAAPDNLPNYENTVVFSLSSFQYLILAAAVSKGAPFRRPLYTNERARPVPPRLPAPPPA
QAGLQEALQAAGTRAGRAALAAAARRPPEVVQAHGHPRHWNSLPLSHQLDPSPATPPPPPPTSLRLATVY
TPPPRPPPPWGSVDYCPLPWTIPRRGGSPQLPSVLLSV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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