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Report for CCDS77770.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
77770.1 Public Homo sapiens 3 PDZRN3 24 110 108 CCDS HistoryNCBI Gene:23024Re-query CCDS DB by CCDS ID:77770.1Re-query CCDS DB by GeneID:23024See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 77770.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000462146.6 ENSP00000418168.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000462146.6Link to Ensembl Protein Viewer:ENSP00000418168.2Re-query CCDS DB by Nucleotide ID:ENST00000462146Re-query CCDS DB by Protein ID:ENSP00000418168
Original member Current member EBI ENST00000466780.5 ENSP00000418484.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000466780.5Link to Ensembl Protein Viewer:ENSP00000418484.1Re-query CCDS DB by Nucleotide ID:ENST00000466780Re-query CCDS DB by Protein ID:ENSP00000418484
Original member Current member NCBI NM_001303140.2 NP_001290069.1 Accepted alive Link to Nucleotide Sequence:NM_001303140.2Link to Protein Sequence:NP_001290069.1Re-query CCDS DB by Nucleotide ID:NM_001303140Re-query CCDS DB by Protein ID:NP_001290069Link to BLAST:NP_001290069.1

Chromosomal Locations for CCDS 77770.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 73383365 73384930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 73385669 73385785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 73387968 73388069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 73389816 73389878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 73391018 73391116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 73400922 73401009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 73404148 73404284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2172 nt):
ATGTTCACGCCTCCATCAGAGTCTCAGCTGGTGGACACGGGAACCCAAACCGACATCACCTTTGAACATA
TCATGGCCCTCACTAAGATGTCCTCTCCCAGCCCACCCGTGCTGGATCCCTATCTCTTGCCAGAGGAGCA
TCCCTCAGCCCATGAATACTACGATCCAAATGACTACATTGGAGACATCCATCAGGAGATGGACAGGGAG
GAGCTGGAGCTGGAGGAAGTGGACCTCTACAGAATGAACAGCCAGGACAAGCTGGGCCTCACTGTGTGCT
ACCGGACGGACGATGAAGACGACATTGGGATTTATATCAGTGAGATTGACCCTAACAGCATTGCAGCCAA
GGATGGGCGCATCCGAGAAGGAGACCGCATTATCCAGATTAATGGGATAGAGGTGCAGAACCGTGAAGAG
GCTGTGGCTCTTCTAACCAGTGAAGAAAATAAAAACTTTTCATTGCTGATTGCAAGGCCTGAACTCCAGC
TGGATGAGGGCTGGATGGATGATGACAGGAACGACTTTCTGGATGACCTGCACATGGACATGCTGGAGGA
GCAGCACCACCAGGCCATGCAATTCACAGCTAGCGTGCTGCAGCAGAAGAAGCACGACGAAGACGGTGGG
ACCACAGATACAGCCACCATCTTGTCCAACCAGCACGAGAAGGACAGCGGTGTGGGGCGGACCGACGAGA
GCACCCGTAATGACGAGAGCTCGGAGCAAGAGAACAATGGCGACGACGCCACCGCATCCTCCAACCCGCT
GGCGGGGCAGAGGAAGCTCACCTGCAGCCAGGACACCTTGGGCAGCGGCGACCTGCCCTTCAGCAACGAG
TCTTTCATTTCGGCCGACTGCACGGACGCCGACTACCTGGGGATCCCGGTGGACGAGTGCGAGCGCTTCC
GCGAGCTCCTGGAGCTCAAGTGCCAGGTGAAGAGCGCCACCCCTTACGGCCTGTACTACCCTAGCGGCCC
CCTGGACGCCGGCAAGAGTGACCCTGAGAGCGTGGACAAGGAGCTGGAGCTGCTGAACGAAGAGCTGCGC
AGCATCGAGCTGGAGTGCCTGAGCATCGTGCGCGCCCACAAGATGCAGCAGCTCAAGGAGCAGTACCGCG
AGTCCTGGATGCTGCACAACAGCGGCTTCCGCAACTACAACACCAGCATCGACGTGCGCAGACACGAGCT
CTCAGATATCACCGAGCTCCCGGAGAAATCCGACAAGGACAGCTCGAGCGCCTACAACACAGGCGAGAGC
TGCCGCAGCACCCCGCTCACCCTGGAGATCTCCCCCGACAACTCCTTGAGGAGAGCGGCGGAGGGCATCA
GCTGCCCGAGCAGCGAAGGGGCTGTGGGGACCACGGAAGCCTACGGGCCAGCCTCCAAGAATCTGCTCTC
CATCACGGAAGATCCCGAAGTGGGCACCCCTACCTATAGCCCGTCCCTGAAGGAGCTGGACCCCAACCAG
CCCCTGGAAAGCAAAGAGCGGAGAGCCAGCGACGGGAGCCGGAGCCCCACGCCCAGCCAGAAGCTGGGCA
GCGCCTACCTGCCCTCCTATCACCACTCCCCATACAAGCACGCGCACATCCCGGCGCACGCCCAGCACTA
CCAGAGCTACATGCAGCTGATCCAGCAGAAGTCGGCCGTGGAGTACGCGCAAAGCCAGATGAGCCTGGTG
AGCATGTGCAAGGACCTGAGCTCTCCCACCCCGTCGGAGCCGCGCATGGAGTGGAAGGTGAAGATCCGCA
GCGACGGGACGCGCTACATCACCAAGAGGCCCGTGCGGGACCGCCTGCTGCGGGAGCGCGCCCTGAAGAT
CCGGGAAGAGCGCAGCGGCATGACCACCGACGACGACGCGGTGAGCGAGATGAAGATGGGGCGCTACTGG
AGCAAGGAGGAGAGGAAGCAGCACCTGGTGAAGGCCAAGGAGCAGCGGCGGCGGCGCGAGTTCATGATGC
AGAGCAGGTTGGATTGTCTCAAGGAGCAGCAAGCAGCCGATGACAGGAAGGAGATGAACATTCTCGAACT
GAGCCACAAAAAGATGATGAAGAAGAGGAATAAGAAAATCTTCGATAACTGGATGACGATCCAAGAACTC
TTAACCCACGGCACAAAATCCCCGGACGGCACTAGAGTATACAATTCCTTCCTATCGGTGACTACTGTAT
AA

Translation (723 aa):
MFTPPSESQLVDTGTQTDITFEHIMALTKMSSPSPPVLDPYLLPEEHPSAHEYYDPNDYIGDIHQEMDRE
ELELEEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQNREE
AVALLTSEENKNFSLLIARPELQLDEGWMDDDRNDFLDDLHMDMLEEQHHQAMQFTASVLQQKKHDEDGG
TTDTATILSNQHEKDSGVGRTDESTRNDESSEQENNGDDATASSNPLAGQRKLTCSQDTLGSGDLPFSNE
SFISADCTDADYLGIPVDECERFRELLELKCQVKSATPYGLYYPSGPLDAGKSDPESVDKELELLNEELR
SIELECLSIVRAHKMQQLKEQYRESWMLHNSGFRNYNTSIDVRRHELSDITELPEKSDKDSSSAYNTGES
CRSTPLTLEISPDNSLRRAAEGISCPSSEGAVGTTEAYGPASKNLLSITEDPEVGTPTYSPSLKELDPNQ
PLESKERRASDGSRSPTPSQKLGSAYLPSYHHSPYKHAHIPAHAQHYQSYMQLIQQKSAVEYAQSQMSLV
SMCKDLSSPTPSEPRMEWKVKIRSDGTRYITKRPVRDRLLRERALKIREERSGMTTDDDAVSEMKMGRYW
SKEERKQHLVKAKEQRRRREFMMQSRLDCLKEQQAADDRKEMNILELSHKKMMKKRNKKIFDNWMTIQEL
LTHGTKSPDGTRVYNSFLSVTTV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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