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Report for CCDS41800.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41800.1 Public Homo sapiens 12 DTX3 24 110 108 CCDS HistoryNCBI Gene:196403Re-query CCDS DB by CCDS ID:41800.1Re-query CCDS DB by GeneID:196403See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41800.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000337737.8 ENSP00000338050.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000337737.8Link to Ensembl Protein Viewer:ENSP00000338050.3Re-query CCDS DB by Nucleotide ID:ENST00000337737Re-query CCDS DB by Protein ID:ENSP00000338050
Original member Current member EBI ENST00000548198.5 ENSP00000447873.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000548198.5Link to Ensembl Protein Viewer:ENSP00000447873.1Re-query CCDS DB by Nucleotide ID:ENST00000548198Re-query CCDS DB by Protein ID:ENSP00000447873
Original member Current member EBI ENST00000548804.5 ENSP00000449294.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000548804.5Link to Ensembl Protein Viewer:ENSP00000449294.1Re-query CCDS DB by Nucleotide ID:ENST00000548804Re-query CCDS DB by Protein ID:ENSP00000449294
Original member Current member NCBI NM_001286246.2 NP_001273175.1 Accepted alive Link to Nucleotide Sequence:NM_001286246.2Link to Protein Sequence:NP_001273175.1Re-query CCDS DB by Nucleotide ID:NM_001286246Re-query CCDS DB by Protein ID:NP_001273175Link to BLAST:NP_001273175.1
Original member Current member NCBI NM_178502.4 NP_848597.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_178502.4Link to Protein Sequence:NP_848597.1Re-query CCDS DB by Nucleotide ID:NM_178502Re-query CCDS DB by Protein ID:NP_848597Link to BLAST:NP_848597.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001273175.1 347 Q8N9I9-1 347 100% 0 0
NP_848597.1 347 Q8N9I9-1 347 100% 0 0

Chromosomal Locations for CCDS 41800.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 57606518 57606518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57606865 57607613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57608520 57608737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57609077 57609152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1044 nt):
ATGTCGTTCGTCCTGTCCAGAATGGCAGCCTGTGGAGGCACCTGCAAGAACAAAGTGACTGTGTCCAAGC
CCGTGTGGGACTTCCTGAGCAAAGAGACCCCAGCCCGGCTGGCCCGGCTTCGGGAGGAGCACCGTGTGTC
CATCCTCATAGATGGCGAGACTTCTGACATCTATGTTCTCCAGCTTTCCCCACAGGGTCCTCCCCCGGCC
CCTCCAAATGGGCTCTACCTAGCCCGGAAGGCTCTCAAGGGGCTGCTAAAAGAGGCAGAGAAAGAGCTGA
AGAAAGCTCAGAGGCAGGGGGAGCTGATGGGCTGCCTGGCTCTGGGGGGTGGAGGGGAGCACCCTGAGAT
GCACCGCGCAGGCCCACCCCCTCTCCGAGCAGCCCCACTTCTGCCCCCAGGAGCTCGGGGGCTCCCCCCT
CCTCCTCCCCCCCTGCCCCCACCTCTTCCTCCTCGCCTTCGGGAGGAGGCAGAAGAGCAGGAGAGCACCT
GCCCCATCTGTCTGGGGGAGATCCAGAATGCCAAGACATTGGAGAAGTGCCGGCATTCATTCTGCGAGGG
CTGCATCACCCGGGCTCTGCAGGTGAAAAAGGCCTGCCCCATGTGCGGCCGCTTCTATGGGCAGCTGGTG
GGCAACCAGCCCCAGAATGGGCGGATGCTGGTCTCTAAGGACGCCACCCTCCTACTGCCCAGCTATGAGA
AGTACGGCACCATTGTCATCCAGTACGTCTTCCCGCCCGGTGTCCAGGGGGCTGAACACCCAAACCCAGG
AGTTCGGTATCCTGGCACCACACGGGTGGCCTACCTCCCGGACTGCCCTGAGGGCAACAAGGTGCTGACC
CTGTTCCGCAAGGCGTTTGACCAGCGTCTCACCTTCACTATCGGCACGTCCATGACCACAGGGAGACCGA
ATGTCATCACCTGGAACGACATCCACCACAAGACCAGCTGCACAGGGGGACCCCAGCTGTTTGGGTACCC
AGACCCCACCTACCTGACCCGGGTGCAAGAGGAGCTGAGAGCGAAGGGTATCACAGATGACTGA

Translation (347 aa):
MSFVLSRMAACGGTCKNKVTVSKPVWDFLSKETPARLARLREEHRVSILIDGETSDIYVLQLSPQGPPPA
PPNGLYLARKALKGLLKEAEKELKKAQRQGELMGCLALGGGGEHPEMHRAGPPPLRAAPLLPPGARGLPP
PPPPLPPPLPPRLREEAEEQESTCPICLGEIQNAKTLEKCRHSFCEGCITRALQVKKACPMCGRFYGQLV
GNQPQNGRMLVSKDATLLLPSYEKYGTIVIQYVFPPGVQGAEHPNPGVRYPGTTRVAYLPDCPEGNKVLT
LFRKAFDQRLTFTIGTSMTTGRPNVITWNDIHHKTSCTGGPQLFGYPDPTYLTRVQEELRAKGITDD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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