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Report for CCDS9446.3 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
9446.3 |
Public |
Homo sapiens |
13 |
BORA |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:79866](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:9446.3](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:79866](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 13 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public Note for CCDS 9446.2 |
The coding region has been updated to shorten the N-terminus to one that is more supported by conservation data. |
Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23
Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)
Attributes |
CDS uses downstream AUG |
Sequence IDs included in CCDS 9446.3
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000390667.11 |
ENSP00000375082.6 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000390667.11](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000375082.6](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000390667](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000375082](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000651477.1 |
ENSP00000498664.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000651477.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000498664.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000651477](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000498664](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001286746.3 |
NP_001273675.2 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001286746.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001273675.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001286746](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001273675](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001273675.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_024808.5 |
NP_079084.4 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_024808.5](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_079084.4](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_024808](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_079084](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_079084.4](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 9446.3
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1680 nt): ATGGGAGATGTCAAGGAATCAAAGATGCAAATAACACCAGAAACTCCAGGAAGGATCCCTGTTTTAAATC CTTTTGAAAGTCCTAGTGATTATTCTAATCTCCATGAACAAACTCTCGCCAGTCCTTCTGTTTTTAAATC AACAAAATTACCAACTCCAGGGAAATTTAGATGGTCTATTGATCAACTAGCTGTAATAAATCCTGTAGAA ATAGACCCAGAAGATATTCATCGTCAAGCTTTATACTTAAGTCATTCTCGAATAGATAAAGATGTGGAAG ACAAAAGACAAAAAGCCATTGAAGAGTTTTTCACTAAAGATGTCATCGTACCCTCTCCTTGGACTGATCA TGAAGGGAAACAGCTTTCACAATGTCATTCCAGTAAATGCACTAACATAAATAGTGACTCTCCAGTTGGA AAAAAGCTGACCATTCATTCTGAGAAAAGCGATGCTGCTTGTCAGACATTGCTGTCTCTTCCTGTGGATT TTAATTTAGAAAATATATTAGGTGACTATTTTAGAGCTGATGAATTTGCAGATCAATCTCCTGGAAACCT CAGTTCTTCATCCCTCAGAAGAAAGCTGTTTTTAGATGGGAACGGAAGCATCTCCGACTCCTTACCTTCG GCTTCTCCCGGAAGTCCTCACAGTGGTGTTCAAACATCACTAGAGATGTTTTATTCAATAGATTTGTCTC CTGTAAAGTGTAGGAGCCCCTTGCAGACACCAAGTTCGGGGCAGTTTTCTTCTAGCCCTATTCAGGCTAG TGCAAAAAAATACAGCTTGGGAAGCATAACTAGTCCTTCGCCTATTTCTTCACCCACTTTCTCACCAATT GAATTTCAGATAGGAGAGACTCCACTCTCAGAACAAAGGAAGTTTACTGTTCATTCTCCTGATGCTTCAT CTGGAACAAATTCTAATGGGATAACTAATCCGTGTATCAGAAGTCCTTATATAGATGGCTGCTCGCCAAT TAAAAATTGGTCTCCTATGAGACTTCAGATGTATAGTGGTGGTACTCAGTATCGGACCTCAGTGATTCAG ATACCTTTTACTCTTGAGACTCAAGGTGAAGATGAGGAAGATAAAGAGAATATTCCTTCCACAGATGTCT CATCACCCGCCATGGATGCTGCTGGAATACACCTACGGCAGTTTAGTAATGAGGCTTCTACCCATGGTAC ACATTTGGTTGTGACTGCCATGTCTGTTACACAAAATCAGTCCAGTGCTTCTGAGAAAGAATTAGCACTG TTGCAGGATGTTGAAAGGGAGAAAGACAATAACACTGTGGATATGGTTGATCCTATAGAGATAGCAGATG AGACCACTTGGATTAAGGAGCCGGTTGATAATGGCAGTTTACCCATGACTGATTTTGTAAGTGGCATTGC CTTCAGTATTGAAAACTCTCATATGTGCATGTCACCTCTTGCTGAAAGCAGTGTCATTCCTTGTGAAAGC AGTAACATTCAGATGGATAGTGGCTATAATACGCAGAATTGTGGAAGCAATATTATGGATACAGTTGGGG CAGAAAGTTACTGCAAAGAAAGTGATGCACAAACATGTGAAGTTGAGAGTAAATCTCAAGCATTTAATAT GAAGCAAGACCACACAACACAGAGGTGTTGGATGAAAACAGCAAGCCCTTTTCAATGCAGCAGTCCATAG
Translation (559 aa): MGDVKESKMQITPETPGRIPVLNPFESPSDYSNLHEQTLASPSVFKSTKLPTPGKFRWSIDQLAVINPVE IDPEDIHRQALYLSHSRIDKDVEDKRQKAIEEFFTKDVIVPSPWTDHEGKQLSQCHSSKCTNINSDSPVG KKLTIHSEKSDAACQTLLSLPVDFNLENILGDYFRADEFADQSPGNLSSSSLRRKLFLDGNGSISDSLPS ASPGSPHSGVQTSLEMFYSIDLSPVKCRSPLQTPSSGQFSSSPIQASAKKYSLGSITSPSPISSPTFSPI EFQIGETPLSEQRKFTVHSPDASSGTNSNGITNPCIRSPYIDGCSPIKNWSPMRLQMYSGGTQYRTSVIQ IPFTLETQGEDEEDKENIPSTDVSSPAMDAAGIHLRQFSNEASTHGTHLVVTAMSVTQNQSSASEKELAL LQDVEREKDNNTVDMVDPIEIADETTWIKEPVDNGSLPMTDFVSGIAFSIENSHMCMSPLAESSVIPCES SNIQMDSGYNTQNCGSNIMDTVGAESYCKESDAQTCEVESKSQAFNMKQDHTTQRCWMKTASPFQCSSP
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